PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA32598
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 36aa    MW: 4084.63 Da    PI: 9.2616
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA32598genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.56.2e-13734229
                               SSS-HHHHHHHHHHHHHTTTT-HHHHHH CS
            Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIar 29
                               g+WT+eEd++l+ +v+q+G g+W++ ++
  Tp57577_TGAC_v2_mRNA32598  7 GAWTPEEDKKLIAYVTQHGHGNWHSLPS 34
                               89*********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.527136IPR017930Myb domain
SuperFamilySSF466896.9E-9435IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-12535IPR009057Homeodomain-like
PfamPF002496.2E-10634IPR001005SANT/Myb domain
CDDcd001674.21E-7835No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 36 aa     Download sequence    Send to blast
MPVLRTGAWT PEEDKKLIAY VTQHGHGNWH SLPSRA
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA32598
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3L9E23e-18A0A2K3L9E2_TRIPR; Transcription factor MYB 32-like protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.12e-12myb domain protein 106