PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA32604
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NF-YA
Protein Properties Length: 234aa    MW: 25643.9 Da    PI: 10.1679
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA32604genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA105.93.4e-3375131158
                  CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                                d p+YVNaKQy++Il+RRq+Rakle+++kl +ksrkpylheSRhkhAl+R Rg+gGrF
  Tp57577_TGAC_v2_mRNA32604  75 DGPIYVNAKQYHGILRRRQSRAKLEAQNKL-IKSRKPYLHESRHKHALNRVRGTGGRF 131
                                57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.7E-3773134IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.17874134IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.0E-247799IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.7E-2877131IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS0068607999IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.0E-24108131IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MKPFLFLNHP DTEFNCSQVD RNSSMAHAPY PYGDPIFAGS LVAYAPQAVN QPQMMPQMMG  60
LASARVALPL DLAQDGPIYV NAKQYHGILR RRQSRAKLEA QNKLIKSRKP YLHESRHKHA  120
LNRVRGTGGR FLSTKQLSQS NAEFVTGSHS GSLNKYEKED NLGIESHHSS KTGDNVSSIT  180
TCSDRTCFSG NSFNFRQPEH MFLGNSPNMG GGAPQCSGGL TFGGTKQRTS VVR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-2275136263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA32604
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9182680.0JQ918268.1 Medicago truncatula nuclear transcription factor Y subunit A3 (NF-YA3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012574919.11e-153nuclear transcription factor Y subunit A-4-like
TrEMBLA0A2K3P9J41e-174A0A2K3P9J4_TRIPR; Nuclear transcription factor Y subunit A-3-like protein
STRINGXP_004513462.11e-152(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69493149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.12e-42nuclear factor Y, subunit A3