PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA32650
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 167aa    MW: 18803.1 Da    PI: 5.9616
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA32650genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.4e-192475156
                        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                               + y+GVr++  +g+WvAeIrdp+    + +r +lg+f t  eAa a+++a+k+l+ge
  Tp57577_TGAC_v2_mRNA32650 24 CNYRGVRQRT-WGKWVAEIRDPK----HgTRLWLGTFKTSIEAALAYDNAAKNLYGE 75
                               56*****999.**********93....46*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.84E-302480No hitNo description
PfamPF008471.9E-132475IPR001471AP2/ERF domain
PROSITE profilePS5103220.4682582IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.5E-292581IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-202581IPR016177DNA-binding domain
SMARTSM003802.3E-322588IPR001471AP2/ERF domain
PRINTSPR003676.4E-102637IPR001471AP2/ERF domain
PRINTSPR003676.4E-104864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MMKNESKVKK PRSRGKGGPE NALCNYRGVR QRTWGKWVAE IRDPKHGTRL WLGTFKTSIE  60
AALAYDNAAK NLYGESAKLN LVPPKNTPTT TSVEVDQNLI IPTQNNDTNC IEENSNNNNN  120
KGVLCETNLD LELQSVPWNN TSNFIMDDFM ELNYSVQDWN PSLLEI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-182581562ATERF1
3gcc_A3e-182581562ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA32650
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1465597e-61AC146559.29 Medicago truncatula clone mth2-12e5, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023905840.16e-38dehydration-responsive element-binding protein 2D-like
RefseqXP_023913579.16e-38dehydration-responsive element-binding protein 2D-like
TrEMBLA0A2Z6LPM62e-68A0A2Z6LPM6_TRISU; Uncharacterized protein
TrEMBLA0A396JW764e-70A0A396JW76_MEDTR; Putative transcription factor AP2-EREBP family
STRINGAES611661e-54(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117534106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.18e-38ERF family protein