PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA32746
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 352aa    MW: 39136.4 Da    PI: 5.0599
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA32746genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.81.8e-20159208255
                        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                 y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ +l+g
  Tp57577_TGAC_v2_mRNA32746 159 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDRAAYRLRG 208
                                59******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.26E-34158217No hitNo description
Gene3DG3DSA:3.30.730.104.6E-32159217IPR001471AP2/ERF domain
SuperFamilySSF541714.51E-23159216IPR016177DNA-binding domain
SMARTSM003802.1E-37159222IPR001471AP2/ERF domain
PROSITE profilePS5103223.077159216IPR001471AP2/ERF domain
PfamPF008472.9E-14160208IPR001471AP2/ERF domain
PRINTSPR003673.3E-11160171IPR001471AP2/ERF domain
PRINTSPR003673.3E-11182198IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MSSRMDFFNN SQDPLNGELM EVLEPFMKSS STTTPTPSSS SLPSTSSPFY SSTPTSSFSP  60
SQPNFYTENG YCSSMMTYQF PSSGSSNSSN SQNNFIGFEQ PQPNSVLGLN NLTTSQINQI  120
QAQIQFQAQQ QNNNNNLSFL GPKPISMKQP GIPPKPTKLY RGVRQRHWGK WVAEIRLPKN  180
RTRLWLGTFD TAEEAALAYD RAAYRLRGDF ARLNFPNMKD QQGLFGEFKV LHSSIDAKLD  240
AICESLGDVN KQGKIEKSVR GSKKDLKKQV QVQVQPLDVV ENNDDNNNKV VVVEGSGSLS  300
SPEGSDDSSP LSDLTFADFA EPQWENGSEQ FNLHKFPSYE IDWDSLGKMM D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-23158216160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA32746
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0161550.0FP016155.2 Medicago truncatula chromosome 5 clone mte1-16i20, COMPLETE SEQUENCE.
GenBankFP1022130.0FP102213.2 Medicago truncatula chromosome 5 clone mtrs-161b8, COMPLETE SEQUENCE.
GenBankJN5958910.0JN595891.1 Medicago truncatula putative AP2/EREBP transcription factor (WXP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012575266.11e-167ethylene-responsive transcription factor RAP2-4-like
SwissprotQ8H1E45e-85RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A1S3EJZ41e-166A0A1S3EJZ4_CICAR; ethylene-responsive transcription factor RAP2-4-like
STRINGXP_004514265.11e-155(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105732109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.11e-50related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]