PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA3298
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 101aa    MW: 11946.3 Da    PI: 5.3128
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA3298genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.93.1e-106091132
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                              rg W++eEde+l+++++  G g+W+++++  g
  Tp57577_TGAC_v2_mRNA3298 60 RGLWSPEEDEKLINYITTQGQGCWSSVPKLAG 91
                              789**************************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.0E-135289IPR009057Homeodomain-like
SuperFamilySSF466891.87E-85494IPR009057Homeodomain-like
PROSITE profilePS5129411.70355100IPR017930Myb domain
PfamPF002491.3E-76091IPR001005SANT/Myb domain
CDDcd001672.96E-463100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
MRQIYLWNTR NDEEEEEEMR GDDNDSKEKD NETYIDQTKE KKETRDIMAH SCCHKEKVKR  60
GLWSPEEDEK LINYITTQGQ GCWSSVPKLA GSIKRKFIKF *
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA3298
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2Z6MMW81e-27A0A2Z6MMW8_TRISU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1750046
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.16e-22myb domain protein 26