PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA33038
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 347aa    MW: 39249.3 Da    PI: 5.0966
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA33038genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.66.6e-142673148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               +g W++eEd++l ++    G g+W+ +ar  g+ R++k+c++rw +yl
  Tp57577_TGAC_v2_mRNA33038 26 KGLWSPEEDDKLMNYMLNSGQGCWSDVARNAGLQRCGKSCRLRWINYL 73
                               678*******************************************97 PP
2Myb_DNA-binding52.31.4e-1679122146
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                rg+++++E+el+++++ +lG++ W+ Ia++++ gRt++++k++w++
  Tp57577_TGAC_v2_mRNA33038  79 RGAFSPQEEELIIHLHSLLGNR-WSQIAARLP-GRTDNEIKNFWNS 122
                                89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.4E-232076IPR009057Homeodomain-like
PROSITE profilePS5129415.0892173IPR017930Myb domain
SuperFamilySSF466891.41E-2724120IPR009057Homeodomain-like
SMARTSM007172.4E-92575IPR001005SANT/Myb domain
PfamPF002491.3E-122673IPR001005SANT/Myb domain
CDDcd001677.37E-82973No hitNo description
PROSITE profilePS5129425.91874128IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.4E-2677129IPR009057Homeodomain-like
SMARTSM007174.9E-1678126IPR001005SANT/Myb domain
PfamPF002492.2E-1579122IPR001005SANT/Myb domain
CDDcd001672.16E-1181121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MERSENSKTM RKPEVSSGKN NNKLRKGLWS PEEDDKLMNY MLNSGQGCWS DVARNAGLQR  60
CGKSCRLRWI NYLRPDLKRG AFSPQEEELI IHLHSLLGNR WSQIAARLPG RTDNEIKNFW  120
NSTIKKRLKN ISSNTSPNAS DESSYDPNKD NNNMVGGFIT SSTVQDQHHI DNHFMPMFNT  180
SSPPSIQNTV FNTIMSSSNG GFFNNNSTTG TFFSQNNNHD NKSYYLEKMF GSVNINGAEG  240
VEMEIYNVPP LESVNNSTIT SENNTIKMEN INACNIGEDT NYNISSYNFD DINNIVNNCN  300
VVKRIDQNRA VDEVENLFHG DLTVADWDLE DLMKDVSSFP FLDFSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-272112822128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00336DAPTransfer from AT3G08500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA33038
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013456181.10.0transcription factor MYB46
TrEMBLA0A2K3NA240.0A0A2K3NA24_TRIPR; Transcription factor MYB 46-like protein
STRINGXP_004507092.11e-179(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77434128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.11e-63myb domain protein 46