PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA3322

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

FAR1

Protein Properties

Length: 257aa MW: 30044.8 Da PI: 10.1832

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA3322	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.2	3.5e-20	24	117	1	90
FAR1 1 kfYneYAkevGFsvrkskskks..krngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkl 81 +fY +Y+k GF vrks s+ + + n+ i++++fvC+k+g re+++ +k+ ++r trt+C a+l+vk + +++++v+ + Tp57577_TGAC_v2_mRNA3322 24 DFYYRYGKYNGFAVRKSDSRVRgsEGNKVIKMKQFVCKKHGVREKRHLVrIDKKLEHRRLTRTKCGARLRVKYKAeKDRYVVSAF 108 6*************9998776688999***********9987756788899************999***** PP FAR1 82 eleHnHela 90 e+ HnHel+ Tp57577_TGAC_v2_mRNA3322 109 EETHNHELT 117 *****95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.0E-18	24	117	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
VRFDTITAEE IRSMEFPTVS EAYDFYYRYG KYNGFAVRKS DSRVRGSEGN KVIKMKQFVC 60 KKHGVREKRH LVRIDKKLEH RRLTRTKCGA RLRVKYKAEK DRYVVSAFEE THNHELTLAR 120 FVQLHPLYRK ISEVDKAQVD GLQKRGIRTC HIMGYMVAQK GGYADVGFTK KCVLLLKMVM 180 YNYFDKKMRA VIKDGDVVAS LNYLNMKSSS DPMLYAEHAV DNINGRMKTI FWADGISRTD 240 YFCFGDVLAF DTTYRKN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA3322

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024640473.1	1e-118	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2K3LXK3	1e-131	A0A2K3LXK3_TRIPR; Uncharacterized protein (Fragment)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3290	7	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-27	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA3322