PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA33308
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 242aa    MW: 26079.6 Da    PI: 6.1242
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA33308genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.2e-204191155
                        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                               ++y+GVr ++ +gr++AeIrdp +   ++r++lg+f+taeeAa+a++ a+++l+g
  Tp57577_TGAC_v2_mRNA33308 41 PRYRGVRKRP-WGRFAAEIRDPLK---KARVWLGTFDTAEEAARAYDTAARNLRG 91
                               68********.**********743...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.8E-144191IPR001471AP2/ERF domain
CDDcd000181.45E-314199No hitNo description
SMARTSM003803.8E-3642105IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-3342100IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-2342100IPR016177DNA-binding domain
PROSITE profilePS5103224.2634299IPR001471AP2/ERF domain
PRINTSPR003672.0E-114354IPR001471AP2/ERF domain
PRINTSPR003672.0E-116581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009737Biological Processresponse to abscisic acid
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
LFHTSNLVEX XXXXXXXXXX XXXAAAAAAA AAAEPGFFKE PRYRGVRKRP WGRFAAEIRD  60
PLKKARVWLG TFDTAEEAAR AYDTAARNLR GPKAKTNFPL AQPFYHNIDA GDPFSDQRFY  120
AGAGVVAGDG FQDHRRPTSS GMSSTVESFS GPRPIGLPAP PSIVAGRRYP RTPPVAPEDC  180
RSDCDSSSSV VDDGDGDNVA SSTMLSFKRQ PLPFDLNAPP LDDADVANYG GEDLHCTLLC  240
L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2139100264ATERF1
3gcc_A3e-2139100264ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:15994908}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00366DAPTransfer from AT3G20310Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA33308
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004513889.11e-120ethylene-responsive transcription factor 7-like
SwissprotQ9LDE44e-55ERF83_ARATH; Ethylene-responsive transcription factor 7
TrEMBLA0A2K3LBC41e-156A0A2K3LBC4_TRIPR; Ethylene-responsive transcription factor 3-like protein
STRINGXP_004513889.11e-119(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22633484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20310.12e-44ethylene response factor 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Giuntoli B,Perata P
    Group VII Ethylene Response Factors in Arabidopsis: Regulation and Physiological Roles.
    Plant Physiol., 2018. 176(2): p. 1143-1155
    [PMID:29269576]