PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA33590
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 223aa    MW: 25522.9 Da    PI: 8.4937
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA33590genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.91.5e-152973147
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                               rg  + +E++ +++++++lG++ W++Ia++++ gRt++++k++w++ 
  Tp57577_TGAC_v2_mRNA33590 29 RGDISSDEEDMIIRLHRLLGNR-WSLIAKRLP-GRTDNEIKNYWNTN 73
                               667799****************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.368123IPR017877Myb-like domain
SuperFamilySSF466892.67E-20982IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-10936IPR009057Homeodomain-like
PROSITE profilePS5129424.3642478IPR017930Myb domain
SMARTSM007172.1E-152876IPR001005SANT/Myb domain
PfamPF002492.9E-142974IPR001005SANT/Myb domain
CDDcd001674.39E-113374No hitNo description
Gene3DG3DSA:1.10.10.602.3E-203774IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
LHSLYVGLKR CGKSCRQRWL NYLKPGIKRG DISSDEEDMI IRLHRLLGNR WSLIAKRLPG  60
RTDNEIKNYW NTNLSKKLQK QPTLSSLPSS SSFSLQHNRH KCGHVAPETP RPRRLKIVHQ  120
YKKNLENING SECDQGSDET SIVDYLIDID HQDHLMVVDD ESNSKIPKME DHKKVGSTNS  180
THSSSSPSHH CHHLEEKFEP LETLLDVELK KMASFLGLEN DL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-20107840108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA33590
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ3374340.0HQ337434.1 Medicago truncatula Myb transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003627264.11e-108myb-related protein 305
TrEMBLA0A2K3N4041e-155A0A2K3N404_TRIPR; Tannin-related R2R3 MYB transcription factor
STRINGAET017401e-107(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF153551012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.12e-39MYB family protein