PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA33598
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 685aa    MW: 75450.5 Da    PI: 7.8826
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA33598genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.62.8e-08571619348
                                SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
            Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                                +WT  E  +l+++v + G+g+W+ I r       +Rt  ++k++w+++l
  Tp57577_TGAC_v2_mRNA33598 571 AWTLVEVMKLIEGVSRCGPGRWSEIKRLSFssySHRTSVDLKDKWRNLL 619
                                7**************************9999**9*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.256564623IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-12566622IPR009057Homeodomain-like
SuperFamilySSF466899.79E-16566626IPR009057Homeodomain-like
SMARTSM007174.7E-9568621IPR001005SANT/Myb domain
CDDcd116606.46E-20570620No hitNo description
PfamPF002495.1E-6571619IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
METVIGIEDN DDGKLEERGV DRSNSALFSP KQISNPVVYK LVRVEGDGRL VPATDDEVME  60
VEDFLEYENS DMRVVADTGQ SLECISIERS SSGKLRLECS EGVSQLGTSE ADLGKLNAKF  120
QILQKVKQEE KLRLSSRSPV HSHVQIDSQC SADNPVIIEK VHSKTPYQGA PSIASSLNYS  180
HSNQSGSIDQ CSRPSEGVIE SGSSASAVNS ALTHDFSMTD GEICLDKLSV KELHELFKVT  240
FGRETTVKDK QWLRRRIAMS LTNSCDVSAT TFTVKDKKIT RKCEAESSGN VSAAPVISVE  300
NMAGEGDVKY KDSCVAEDCR VDDNQVASET RLETLNTEHE LGDEDQQSEE RAAKRMRKPT  360
KRYIEELSEN ESREYNHRSS SSNKNTGHIH VSPTSNKNTG HRHVSPTSQV RPATNALPEA  420
RTFVTRLDSL GGYGVQIPCV SRVRRSRPRK TITSLMKFHP TGMVEAAKLG NKVVRDHGSE  480
ADSVIQDKIS KPSSMPVKIH QPVRPTESAS DRMSKSTSES GKEKQCPVTV TAEPRQESKP  540
KKTDTSSCTE EHNIVTVPTA KGGMRRKHHR AWTLVEVMKL IEGVSRCGPG RWSEIKRLSF  600
SSYSHRTSVD LKDKWRNLLK ASFAPTPADE GMNSRKHGTA PIPEPILVRV RELAEINSQV  660
PPNFSSSKLT TTGGTVSGDR LGYL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1443449RRSRPRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA33598
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003627253.20.0uncharacterized protein LOC11429459 isoform X2
TrEMBLA0A2K3PBP90.0A0A2K3PBP9_TRIPR; MYB family transcription factor
STRINGAET017290.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-106TRF-like 6