PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA33615
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 98aa    MW: 10819.2 Da    PI: 8.0842
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA33615genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.51e-172701887
                               --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                         B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr 87
                               +p +f +eh   +++ +++tl++++g+ W+v+ i ++k+++ +++ +GW  Fv++n+Lk+gD ++F+l+++
  Tp57577_TGAC_v2_mRNA33615  2 IPYQFGAEHF--PARRTEVTLRNSRGECWTVNSIPDGKGRGaHTFCGGWMAFVRDNDLKVGDACIFELVSN 70
                               9********7..557789***************986666556*************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.606181IPR003340B3 DNA binding domain
SuperFamilySSF1019363.14E-21179IPR015300DNA-binding pseudobarrel domain
CDDcd100172.99E-17177No hitNo description
SMARTSM010197.1E-5181IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.0E-22178IPR015300DNA-binding pseudobarrel domain
PfamPF023623.5E-15270IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
RIPYQFGAEH FPARRTEVTL RNSRGECWTV NSIPDGKGRG AHTFCGGWMA FVRDNDLKVG  60
DACIFELVSN YVMQVYISGV GKEGFDHQNG HAKLNSV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA33615
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003589266.13e-49B3 domain-containing protein Os11g0197600 isoform X1
TrEMBLA0A2K3MRE84e-53A0A2K3MRE8_TRIPR; B3 domain-containing protein
STRINGAES595171e-48(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14202819
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.12e-08B3 family protein