PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA33623
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 966aa    MW: 107423 Da    PI: 7.3076
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA33623genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.9e-16669714147
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                +g+W++eEd  l ++v q+G ++W++Iar +  gR++k+c++rw + 
  Tp57577_TGAC_v2_mRNA33623 669 KGPWSPEEDAVLSRLVSQFGARNWSLIARGIS-GRSGKSCRLRWCNQ 714
                                79******************************.***********985 PP
2Myb_DNA-binding55.21.6e-17721765147
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                r+++T eEd  +v a++ +G++ W++Iar ++ gRt++ +k++w++ 
  Tp57577_TGAC_v2_mRNA33623 721 RKPFTDEEDRAIVAAHAIHGNK-WAAIARLLP-GRTDNAIKNHWNST 765
                                789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF495031.09E-3749195IPR008972Cupredoxin
TIGRFAMsTIGR033892.5E-20451591IPR017761Laccase
CDDcd138494.01E-6655171No hitNo description
PfamPF077329.4E-4059172IPR011707Multicopper oxidase, type 3
Gene3DG3DSA:2.60.40.4207.2E-3061189IPR008972Cupredoxin
SuperFamilySSF495032.54E-37180366IPR008972Cupredoxin
PfamPF003949.3E-36185335IPR001117Multicopper oxidase, type 1
CDDcd138752.56E-74186332No hitNo description
Gene3DG3DSA:2.60.40.4201.3E-45190363IPR008972Cupredoxin
SuperFamilySSF495034.07E-37376446IPR008972Cupredoxin
Gene3DG3DSA:2.60.40.4203.0E-43376421IPR008972Cupredoxin
CDDcd138978.75E-70440584No hitNo description
Gene3DG3DSA:2.60.40.4203.0E-43455589IPR008972Cupredoxin
PfamPF077311.9E-37467583IPR011706Multicopper oxidase, type 2
SuperFamilySSF495034.07E-37478592IPR008972Cupredoxin
PROSITE patternPS000790559579IPR033138Multicopper oxidases, conserved site
PROSITE patternPS000800564575IPR002355Multicopper oxidase, copper-binding site
PROSITE profilePS5129419.386664715IPR017930Myb domain
SuperFamilySSF466891.91E-29666762IPR009057Homeodomain-like
SMARTSM007177.2E-14668717IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-25670722IPR009057Homeodomain-like
CDDcd001671.18E-12671713No hitNo description
PfamPF139214.0E-15672730No hitNo description
PROSITE profilePS5129426.257716770IPR017930Myb domain
SMARTSM007173.2E-17720768IPR001005SANT/Myb domain
CDDcd001672.24E-12723766No hitNo description
Gene3DG3DSA:1.10.10.603.6E-23723769IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046274Biological Processlignin catabolic process
GO:0055114Biological Processoxidation-reduction process
GO:0048046Cellular Componentapoplast
GO:0003677Molecular FunctionDNA binding
GO:0005507Molecular Functioncopper ion binding
GO:0052716Molecular Functionhydroquinone:oxygen oxidoreductase activity
Sequence ? help Back to Top
Protein Sequence    Length: 966 aa     Download sequence    Send to blast
MSHILSYIYN WGVIKIDNNF ISINFPNMTR FMYSLAWPFV LLLASSLASA AIVEHTWNVE  60
DINFQLLCRP QVITAVNGTL PGPTINAREG DTVIIHVINK SPYNLTIHWH GIIQFLTPWS  120
DGPEYVTQCP IPSNGSYTYQ FNLTGQEGTL WWHAHSSFLR ATVYGALIIK PRLGHTYPYP  180
KVYQEVPLVV GEWWNANVEE VERNATDTGN PPLESIASTI NGFPGDLFNC SQDKTYTLKV  240
KRGKTYLLRV INAALNEQHF FKVANHTLTV VAMDAIYTEH YNTDVIVLAP GQTVDVLLRT  300
NQAVDSYYMV FTPYRSSNVG TNNITTRGVI IYDGANSTTK TPIMPILPDE HDTPTAHKFY  360
TNVTGLTTSR HWVRVPRKVD EDMFISFGIG LETCINPGPG RCVVLNSRLS ANMNNESFVL  420
PKGKRYSLLE AFYRNASNGI YTKDFPNKPV FEFNYTDPAL MNIDPADPLA FAPKSTKIKT  480
LKFNSTVQIV LQNNAILGAE NHPIHIHGYN FHVLAQGFGN YNSTRDERKF NFFNPQMRNT  540
ISVPVGGWAV IRFQANNPGI WFMHCHLETH LPWGLGMAFE VENGPTPETT IPXXXXXXXX  600
XXXNSYLRID TLRSTNILVV TIGSHDWKLD SSDRSSKDHD ACVFGVLSLS DEALLALGED  660
DVSNGNKVKG PWSPEEDAVL SRLVSQFGAR NWSLIARGIS GRSGKSCRLR WCNQLDPSVK  720
RKPFTDEEDR AIVAAHAIHG NKWAAIARLL PGRTDNAIKN HWNSTLRRRG IDQIRLESGI  780
MVEAKASSEE TLSCGDVNSL KSSEGRDVSS MEIVAGKHEG NARTDEVRDP PTLFKPVARV  840
SAFNVYNTFN GSQPSTSVPR PVPMQGPILH PPKSDAEICK MLNRTIGDRS VPNQCGHGCC  900
SSLNGNSSKI SLLGPEFIEY SEPQSFPSFE LAAIATDISN LAWLKSGLEN SSVKMMGDTA  960
GRVNM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1aoz_A3e-56505791521ASCORBATE OXIDASE
1aoz_B3e-56505791521ASCORBATE OXIDASE
1aso_A3e-56505791521ASCORBATE OXIDASE
1aso_B3e-56505791521ASCORBATE OXIDASE
1asp_A3e-56505791521ASCORBATE OXIDASE
1asp_B3e-56505791521ASCORBATE OXIDASE
1asq_A3e-56505791521ASCORBATE OXIDASE
1asq_B3e-56505791521ASCORBATE OXIDASE
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtLignin degradation and detoxification of lignin-derived products. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA33623
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013454903.10.0laccase-7
SwissprotQ9SR400.0LAC7_ARATH; Laccase-7
TrEMBLA0A072UHQ40.0A0A072UHQ4_MEDTR; Laccase
STRINGXP_004506638.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09230.11e-94myb domain protein 1
Publications ? help Back to Top
  1. McCaig BC,Meagher RB,Dean JF
    Gene structure and molecular analysis of the laccase-like multicopper oxidase (LMCO) gene family in Arabidopsis thaliana.
    Planta, 2005. 221(5): p. 619-36
    [PMID:15940465]
  2. Pourcel L, et al.
    TRANSPARENT TESTA10 encodes a laccase-like enzyme involved in oxidative polymerization of flavonoids in Arabidopsis seed coat.
    Plant Cell, 2005. 17(11): p. 2966-80
    [PMID:16243908]
  3. Cai X, et al.
    Mutant identification and characterization of the laccase gene family in Arabidopsis.
    J. Exp. Bot., 2006. 57(11): p. 2563-9
    [PMID:16804053]
  4. Abdel-Ghany SE,Pilon M
    MicroRNA-mediated systemic down-regulation of copper protein expression in response to low copper availability in Arabidopsis.
    J. Biol. Chem., 2008. 283(23): p. 15932-45
    [PMID:18408011]
  5. Turlapati PV,Kim KW,Davin LB,Lewis NG
    The laccase multigene family in Arabidopsis thaliana: towards addressing the mystery of their gene function(s).
    Planta, 2011. 233(3): p. 439-70
    [PMID:21063888]
  6. Zhao Y, et al.
    MicroRNA857 Is Involved in the Regulation of Secondary Growth of Vascular Tissues in Arabidopsis.
    Plant Physiol., 2015. 169(4): p. 2539-52
    [PMID:26511915]
  7. Ranocha P, et al.
    Biochemical characterization, molecular cloning and expression of laccases - a divergent gene family - in poplar.
    Eur. J. Biochem., 1999. 259(1-2): p. 485-95
    [PMID:9914531]