PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA33705
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family HD-ZIP
Protein Properties Length: 149aa    MW: 17035.2 Da    PI: 8.4804
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA33705genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.21.2e-1779130455
                                -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                   Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                                + ++tkeq + Le++F+ ++++++++++ LA+kl+L++rqV vWFqNrRa++
  Tp57577_TGAC_v2_mRNA33705  79 KLRLTKEQSTMLEDAFKLHNTINTAQKRALAEKLNLKQRQVEVWFQNRRARK 130
                                5679**********************************************96 PP
2HD-ZIP_I/II74.42.2e-2478132256
                HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtkt 56 
                                kk+rl+keq+++LE+ F+ ++++++ +K +la++L+l++rqv+vWFqnrRAR  +
  Tp57577_TGAC_v2_mRNA33705  78 KKLRLTKEQSTMLEDAFKLHNTINTAQKRALAEKLNLKQRQVEVWFQNRRARKEK 132
                                9***************************************************754 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.28E-1771134IPR009057Homeodomain-like
PROSITE profilePS5007116.13173133IPR001356Homeobox domain
SMARTSM003892.6E-1475137IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.0E-1778130IPR009057Homeodomain-like
CDDcd000861.33E-1278132No hitNo description
PfamPF000464.7E-1579130IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MSDYHKSFTL DLNLGLGLGS YVQNNVNNSL VSSKDELTIG LNHDDKANEL SLKRVHEEHV  60
IEEEIAIDTT NDNNGCTKKL RLTKEQSTML EDAFKLHNTI NTAQKRALAE KLNLKQRQVE  120
VWFQNRRARK EKGFKQGHYE QINKIVIS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA33705
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1867312e-33AC186731.2 Medicago truncatula chromosome 2 BAC clone mth2-84a4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003595132.14e-65homeobox-leucine zipper protein HAT4
RefseqXP_013463424.14e-65homeobox-leucine zipper protein HAT4
TrEMBLA0A2K3NHN43e-86A0A2K3NHN4_TRIPR; Homeobox-leucine zipper protein HAT14-like
STRINGAES653831e-64(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56642851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.18e-22HD-ZIP family protein