PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA3378
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family CO-like
Protein Properties Length: 436aa    MW: 47836.4 Da    PI: 5.4219
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA3378genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.54.7e-072465439
                  zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                              r C+++ + +   fC+ ++ +lC+ C + +H        H++
  Tp57577_TGAC_v2_mRNA3378 24 RACDTCRSAPCAVFCRADSAYLCAGCDSRIHAAnrvasrHER 65
                              67*****************************55567777765 PP
2zf-B_box29.71.4e-0992137342
                  zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                                ++C+ +e+ ++ + C+ +   lC +C   +H+       H++vp+
  Tp57577_TGAC_v2_mRNA3378  92 VWVCEACERAPAAFLCKADAASLCSSCDADIHSAnplasrHQRVPI 137
                               689*****************************66999999*99997 PP
3CCT70.15.7e-24366409144
                       CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                               Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  Tp57577_TGAC_v2_mRNA3378 366 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRT 409
                               9*****************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.7E-72168IPR000315B-box-type zinc finger
CDDcd000217.54E-72466No hitNo description
PROSITE profilePS5011910.2392668IPR000315B-box-type zinc finger
SMARTSM003363.6E-1590137IPR000315B-box-type zinc finger
PROSITE profilePS5011911.19290137IPR000315B-box-type zinc finger
PfamPF006431.1E-791137IPR000315B-box-type zinc finger
CDDcd000213.30E-893137No hitNo description
PfamPF062038.9E-18366408IPR010402CCT domain
PROSITE profilePS5101716.648366408IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009909Biological Processregulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048576Biological Processpositive regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MLEHEFLTTT SATGSVRSAV TWPRACDTCR SAPCAVFCRA DSAYLCAGCD SRIHAANRVA  60
SRHERVXXXX XXXXXXXXXH AANRVASRHE RVWVCEACER APAAFLCKAD AASLCSSCDA  120
DIHSANPLAS RHQRVPILPI SGYLYGPPTT LLGADDEGFV GGGCAGGEVE EEEDEGMEDE  180
DEAASWLLLN PLKNSNNNSN NHNNNINNNS NDHNNQEGNN GFLFSGEVDE YLDLVDCNSC  240
GGGDNTFTTN TTTTATTHHD EYSHQQQDHY GVPQKSYVGD SVVPVQQQQV QNFQLGLEFE  300
NSKAGFSYNG GSISQSVSVS SMDVGVVPES TMRDVSMNYS RTSKGTIDLF SGPPIQMSSH  360
FSPMDREARV LRYREKKKTR KFEKTIRYAS RKAYAETRPR IKGRFAKRTD ADAEVDQMFS  420
TSLITEVGYG IVPSF*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA3378
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013447714.10.0zinc finger protein CONSTANS-LIKE 2
SwissprotQ965021e-127COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLA0A2K3PM880.0A0A2K3PM88_TRIPR; Zinc finger protein CONSTANS-like 2-like
STRINGXP_004491763.11e-173(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38273352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.11e-38CONSTANS-like 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]