PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA33818

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

bHLH

Protein Properties

Length: 250aa MW: 28857.1 Da PI: 9.0567

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA33818	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.6	4.5e-13	69	121	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ +hn+ Er RR+++N+ ++ Lr+llP + + kK+s + ++ +YI +Lq Tp57577_TGAC_v2_mRNA33818 69 KKLNHNASERDRRKKVNNLISSLRSLLPGeD---QTKKMSIPVTISRVLKYIPELQ 121 6789***********************66...8888*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.151	68	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.3E-14	69	138	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.88E-10	69	125	No hit	No description
Pfam	PF00010	3.0E-10	69	121	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.0E-11	69	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-9	74	126	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MVAFCSPQFS YSNMGWFLEE LEPESLLISH KQKNYVSLEY SLPHNEFSSP IKQDVEDIER 60 SQSPKLMVKK LNHNASERDR RKKVNNLISS LRSLLPGEDQ TKKMSIPVTI SRVLKYIPEL 120 QKQVEGLIKK KEDFLSRISR QEYAVNKESS QRKIPIYNSS FIVSTSRLND IELAIHISSY 180 EANKIPLSEI LMCLEDNGLF LLNSSSSKTF GGRLFYNLHF QVEKTQRLEC DALIQKLLSI 240 CEKQRSNQY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA33818

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004493429.1	1e-134	transcription factor bHLH100
TrEMBL	A0A1S2XRJ6	1e-132	A0A1S2XRJ6_CICAR; transcription factor bHLH100
STRING	XP_004493429.1	1e-133	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2402	33	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56970.1	4e-52	bHLH family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA33818