PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA33916
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 199aa    MW: 22021.2 Da    PI: 5.6054
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA33916genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.52.6e-0727482446
                               HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqk 46
                               W+ Ia++++ gRt++++k++w++
  Tp57577_TGAC_v2_mRNA33916 27 WSIIASKLQ-GRTDNDVKNYWNT 48
                               9********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.679150IPR017877Myb-like domain
SuperFamilySSF466891.39E-62556IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-102554IPR009057Homeodomain-like
CDDcd001671.12E-42750No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MWTVSDQYRT VHIQGSADLS LIKIKWWSII ASKLQGRTDN DVKNYWNTKL KKKFMFINHS  60
MEMKSQQVTL LSILQSSTST SQSLSFTSNK NNSYYHHSNG SFTSSFSNSS TSSSLLSGNS  120
STSAAQESFI GSSQKCGDAA FVEQNIGDVS YIYEVEDSEK LMFSNGGSVN GFWEENPLDY  180
GVISTTSTSS CNNFLFDE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA33916
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF4684793e-45EF468479.1 Medicago truncatula MYB transcription factor MYB37 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003625681.11e-55transcription factor RAX2
TrEMBLA0A2K3LP215e-61A0A2K3LP21_TRIPR; MYB transcription factor-like protein
STRINGAES818995e-55(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.16e-07MYB family protein