PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA33965
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MIKC_MADS
Protein Properties Length: 486aa    MW: 53785.8 Da    PI: 5.0435
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA33965genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF23.57.1e-081223051
                               HHT-EEEEEEE-TTSEEEEEE- CS
                     SRF-TF 30 LCdaevaviifsstgklyeyss 51
                               LCdaev ++ifs+tgklyey+s
  Tp57577_TGAC_v2_mRNA33965  1 LCDAEVGLVIFSTTGKLYEYAS 22
                               9*******************86 PP
2K-box26.72.3e-104414834183
                      K-box  41 edLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 
                                ed e L+l  LqqLe+ Le++lk++ + K++ ++++i +lq+k
  Tp57577_TGAC_v2_mRNA33965 441 EDFEGLNLDGLQQLEKTLETGLKRVIQMKEKRVMNEIGTLQMK 483
                                8999*************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006611.367124IPR002100Transcription factor, MADS-box
PfamPF003199.3E-5120IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.14E-6126IPR002100Transcription factor, MADS-box
PROSITE profilePS512977.811399485IPR002487Transcription factor, K-box
PfamPF014863.3E-6440483IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
LCDAEVGLVI FSTTGKLYEY ASSRYANPAA QPAAQPAPQP AAQALPAAHR VPAPPDVAET  60
LHVLFVLPVS KDFLPSKEPT EPSVVIDEFP ILDESLPSME ATEEQSMTDE SIGVSNLRME  120
ELMPVSEILD KALVRMPLQL ISAPPSKELC WMYLTPNCLS HARLNAPTKS LPPKPPDWTY  180
HAMSNPPQPP EPPDSTRCVV TTRIAQDILT ITKGVDKNVS MGEIIATLAI AQGKYVGTGL  240
FNAPPSGLEL EFDFHANVGS STFPHXXXXX XXXXXXXXXX XXXHHRFSTI TQPRNSHNSI  300
NAHILFQPVL VCGNQLNIQD MPSLWLPRSF SEYANSPWPQ IVQLVDVSVW VAAVLDSCAP  360
KLPMVLLPLV VHTTCMKDII ARYNQHSQQL NKLDEPLQLQ VETSVSAELH KEVADKTQQX  420
XXXXXXXXXX XXXXXXXSVC EDFEGLNLDG LQQLEKTLET GLKRVIQMKE KRVMNEIGTL  480
QMKVC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA33965
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3PQ218e-78A0A2K3PQ21_TRIPR; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-16MIKC_MADS family protein