PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA34008

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

bZIP

Protein Properties

Length: 275aa MW: 31380.6 Da PI: 5.0312

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA34008	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	20.2	1.3e-06	57	90	6	39
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 6 rerrkqkNReAArrsRqRKkaeieeLeekvkeLe 39 + r+++ +A +rsR+RK++++++Le k+ke + Tp57577_TGAC_v2_mRNA34008 57 KMRKLMLTSLANKRSRLRKQMYLANLEIKAKETQ 90 556666666899******************9865 PP

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MYQGSNNSFS ISHMSPTSNA LPNATIDSKA IVEQANVWAA SRSNFGLNCD KKMDPKKMRK 60 LMLTSLANKR SRLRKQMYLA NLEIKAKETQ VQIDHDLRPK IEAKLYQKGS LLLEREKIIH 120 DINILEKELL LKSALTKELL TELKVWKELY TMNSDNNVPP ISYDLFSNYC SNPFDQALTE 180 ELLIGLNVSN EQHTMQQEHQ TQILDSNDYN VQQISCDPFP NDFSIPYDQD IEPNESQIWG 240 ATIANKHEMN EVDFPNGIGL VDMIPTPTFN NQFP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA34008

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004500440.1	3e-42	uncharacterized protein LOC101503209
TrEMBL	A0A072UZ57	6e-49	A0A072UZ57_MEDTR; Uncharacterized protein
STRING	XP_004500440.1	1e-41	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF18156	3	4

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA34008