PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA34042

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

bZIP

Protein Properties

Length: 359aa MW: 40493.2 Da PI: 7.728

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA34042	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.9	1.6e-11	66	95	4	33
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 +k+ rr+++NReAAr+sR+RKka++++Le+ Tp57577_TGAC_v2_mRNA34042 66 SKVLRRLAQNREAARKSRLRKKAYVQQLET 95 5899************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.7E-5	63	123	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.1E-8	67	95	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	9.85E-7	67	99	No hit	No description
PROSITE pattern	PS00036	0	70	85	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	7.8E-7	70	95	No hit	No description
Pfam	PF14144	7.7E-26	155	228	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MDIYEPLQQV SMWGDSFKVE GGLNSIASPM LLVNTTTSME NKSEYIPHEP SEPSEVNQET 60 TNKDVSKVLR RLAQNREAAR KSRLRKKAYV QQLETSRLKL MQLELEIGRA RKQGMCTGNA 120 LDTTFMGSPE TINPGIVAFE IEYGNWVDEN HRRNEELRNV FQANASEVQL GQVVQNVLSH 180 YTDLFRLKAE AAKSDVLYLI SGVWKPSVER LFLWIGGARP SQLLNLIVPQ LDPLTEQQLA 240 SIKKLHLSSQ QAEDALSQGL EKLQQSLVQD MAVDPFSATN HGFQMAIAIR KFEALESFVS 300 QADHLRRETL IYMSRILSTH QAARGLIALG EYFHRLRTLG SRWTSRPCDS VISPRITP*

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MDIYEPLQQV SMWGDSFKVE GGLNSIASPM LLVNTTTSME NKSEYIPHEP SEPSEVNQET  60
TNKDVSKVLR RLAQNREAAR KSRLRKKAYV QQLETSRLKL MQLELEIGRA RKQGMCTGNA  120
LDTTFMGSPE TINPGIVAFE IEYGNWVDEN HRRNEELRNV FQANASEVQL GQVVQNVLSH  180
YTDLFRLKAE AAKSDVLYLI SGVWKPSVER LFLWIGGARP SQLLNLIVPQ LDPLTEQQLA  240
SIKKLHLSSQ QAEDALSQGL EKLQQSLVQD MAVDPFSATN HGFQMAIAIR KFEALESFVS  300
QADHLRRETL IYMSRILSTH QAARGLIALG EYFHRLRTLG SRWTSRPCDS VISPRITP*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA34042

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004515653.1	0.0	transcription factor TGA3-like isoform X2
Swissprot	Q39162	1e-123	TGA4_ARATH; Transcription factor TGA4
TrEMBL	A0A2K3PBI3	0.0	A0A2K3PBI3_TRIPR; Transcription factor TGA4
STRING	XP_004515651.1	0.0	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10030.2	1e-125	TGACG motif-binding factor 4

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA34042

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Canales J,Contreras-López O,Álvarez JM,Gutiérrez RA Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana. Plant J., 2017. 92(2): p. 305-316 [PMID:28771873]