PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA34249
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NF-YC
Protein Properties Length: 89aa    MW: 9525.23 Da    PI: 7.3595
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA34249genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC25.82.3e-0841746699
                      NF-YC 66 aeenkrrtlkksdiaaavtrtdifdflvdivprd 99
                               a + krrtl+k dia+av  tdifdfl+  v ++
  Tp57577_TGAC_v2_mRNA34249 41 AIDGKRRTLNKEDIASAVIATDIFDFLITLVSNS 74
                               5689************************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471133.26E-71567IPR009072Histone-fold
Gene3DG3DSA:1.10.20.107.7E-74072IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MRQAGAYSNL LCGGISGRTG PHSLPLARIK KIXXXXXXXM AIDGKRRTLN KEDIASAVIA  60
TDIFDFLITL VSNSDATDDA TVIQMETI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA34249
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1361383e-52AC136138.30 Medicago truncatula clone mth2-8f9, complete sequence.
GenBankJQ9182983e-52JQ918298.1 Medicago truncatula nuclear transcription factor Y subunit C6 (NF-YC6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003596534.13e-37nuclear transcription factor Y subunit C-1
TrEMBLA0A2K3LAA62e-44A0A2K3LAA6_TRIPR; Nuclear transcription factor Y subunit C-3-like protein
STRINGAES667851e-36(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105592841
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54830.31e-10nuclear factor Y, subunit C3