PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA3425
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C3H
Protein Properties Length: 373aa    MW: 39994.8 Da    PI: 7.0206
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA3425genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH246.6e-0892116126
                               --S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                               +kt+lC+ f+  GtC+y  +C+FaH+
  Tp57577_TGAC_v2_mRNA3425  92 FKTKLCCKFRV-GTCPYITNCNFAHS 116
                               69*********.*************8 PP
2zf-CCCH18.63.4e-06168193126
                               --S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                               yk + C+ f+    C+yGd+C+F H+
  Tp57577_TGAC_v2_mRNA3425 168 YKGRHCKKFYTEEGCPYGDSCTFLHD 193
                               77888********************7 PP
3zf-CCCH42.88.5e-14253278126
                               --S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                               +kt++C+ +  tG+C++G++C+FaHg
  Tp57577_TGAC_v2_mRNA3425 253 WKTRICNKWEMTGYCPFGNKCHFAHG 278
                               8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902299.29E-889122IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.8E-1489124IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.13691118IPR000571Zinc finger, CCCH-type
SMARTSM003560.003291117IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-592116IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-10163195IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.81E-8164195IPR000571Zinc finger, CCCH-type
SMARTSM003560.086167194IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.098167195IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.6E-17248282IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-10249283IPR000571Zinc finger, CCCH-type
SMARTSM003568.8E-9252279IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.309252280IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-10253278IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MDYNRDGNVV QIITSGGGGG GADSWSTDQA DWATEDEYRY WNGNEAGETT PSSNSNSEIQ  60
QRSGSEPPSK KSRSNSQDGG SNRAKAIGKM FFKTKLCCKF RVGTCPYITN CNFAHSVEEL  120
RRPPANWQEI VAAHEEERNV LEQPREEFQI PTVGSSTFVG ESMNNRSYKG RHCKKFYTEE  180
GCPYGDSCTF LHDEQSKNRE SVAISLGPGG YGGGGGGGSI GSGGGGVSSS GVVVVAAGAA  240
AAGNGPNLKP SNWKTRICNK WEMTGYCPFG NKCHFAHGAT ELHRYGGGLM EGESRDTASG  300
VASDTKQGVL SKNHADNVVA STPVAQSDVY HIGVPSQRPS IVSQRPGQRA HQKWKGPDKI  360
SRIYGDWIDD FE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA3425
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1482370.0AC148237.7 Medicago truncatula chromosome 8 clone mth2-1o14, complete sequence.
GenBankAC1496390.0AC149639.23 Medicago truncatula chromosome 8 clone mth2-154b23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003628788.10.0zinc finger CCCH domain-containing protein 12
SwissprotQ84UQ31e-124C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
SwissprotQ9LQM31e-123C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A2Z6P4140.0A0A2Z6P414_TRISU; Uncharacterized protein
STRINGAET032640.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77513342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-122C3H family protein