PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA34267
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family HD-ZIP
Protein Properties Length: 353aa    MW: 39305.8 Da    PI: 6.3722
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA34267genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.61e-18145199256
                                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                rk+ +++keq   Lee F+++++++ ++++ LAk+l+L+ rqV vWFqNrRa+ k
  Tp57577_TGAC_v2_mRNA34267 145 RKKLRLSKEQSMLLEETFKEHNTLNPKQKQALAKQLNLKPRQVEVWFQNRRARTK 199
                                788899***********************************************98 PP
2HD-ZIP_I/II126.31.4e-40145234191
                HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 
                                +kk+rlskeq+ lLEe+F+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev
  Tp57577_TGAC_v2_mRNA34267 145 RKKLRLSKEQSMLLEETFKEHNTLNPKQKQALAKQLNLKPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKEV 228
                                69********************************************************************************** PP

                HD-ZIP_I/II  85 eeLreel 91 
                                +eLr +l
  Tp57577_TGAC_v2_mRNA34267 229 QELR-AL 234
                                ***9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046187.9E-281109IPR006712HD-ZIP protein, N-terminal
PROSITE profilePS512575120No hitNo description
SuperFamilySSF466892.74E-19130202IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.5E-19138200IPR009057Homeodomain-like
PROSITE profilePS5007117.702141201IPR001356Homeobox domain
SMARTSM003895.1E-16143205IPR001356Homeobox domain
PfamPF000465.4E-16145199IPR001356Homeobox domain
CDDcd000861.22E-15145202No hitNo description
PROSITE patternPS000270176199IPR017970Homeobox, conserved site
SMARTSM003405.6E-27201244IPR003106Leucine zipper, homeobox-associated
PfamPF021834.1E-11201235IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MGEKDDDFSL GLGLSLSLGC GDYAKNNNEI PLKVNHMQKP PQSVSNQRVS FNNLFHSHDL  60
STETRSFLRG IDANSPHPSA PAAAFEDENG VSSPNSTVSS ISGKRSEREG NGDENDAVER  120
ASCSRGGGSD DDDGGGCGGD GDSSRKKLRL SKEQSMLLEE TFKEHNTLNP KQKQALAKQL  180
NLKPRQVEVW FQNRRARTKL KQTEVDCEYL KRCCETLTEE NRRLQKEVQE LRALKLSPQL  240
YMQMNPPTTL TMCPSCERVA VSSASSSSAA APXXXXXXXX XXXXXXXXXX XXXXXXXXXX  300
TTNTYQPMGG NDEKENPNLN YIIFFMGFVI PLGEKRWDFV QDFRGDKLRG FP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143149SRKKLRL
2193201RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA34267
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013443795.11e-149homeobox-leucine zipper protein HAT3
SwissprotP466021e-101HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLA0A072TWD71e-147A0A072TWD7_MEDTR; Homeobox associated leucine zipper protein
STRINGXP_004515372.11e-127(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123934105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.15e-73homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]