PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA34354
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NF-YC
Protein Properties Length: 112aa    MW: 12631.5 Da    PI: 8.2667
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA34354genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC53.64.9e-1760101139
                      NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmi 39 
                                ql++fw++q   i+k+tdfknh+lPlarikki+kadedv+m+
  Tp57577_TGAC_v2_mRNA34354  60 QLQTFWANQyqeIGKVTDFKNHSLPLARIKKIMKADEDVRMV 101
                                89******988899***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471136.88E-859101IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.2E-1076101IPR009072Histone-fold
PfamPF008081.6E-482101IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
MDCLGHNQNP PTLSVGSADQ WPFGFILCHP NHIISPAGAQ LGQHQLAYQL IQQQQQLQQQ  60
LQTFWANQYQ EIGKVTDFKN HSLPLARIKK IMKADEDVRM VLTVFGTKLH L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA34354
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1502443e-59AC150244.2 Medicago truncatula chromosome 7 clone mth2-180p14, complete sequence.
GenBankDQ4552853e-59DQ455285.1 Medicago truncatula cDNA-AFLP fragment BT11M24_218 sequence.
GenBankJQ9182943e-59JQ918294.1 Medicago truncatula nuclear transcription factor Y subunit C2 (NF-YC2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004494629.13e-31nuclear transcription factor Y subunit C-3-like
TrEMBLA0A2K3N1H18e-59A0A2K3N1H1_TRIPR; Nuclear transcription factor Y subunit C-9-like protein
STRINGXP_004494629.11e-30(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.44e-18nuclear factor Y, subunit C9