PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA34420

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

NF-YB

Protein Properties

Length: 191aa MW: 22471.3 Da PI: 10.312

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA34420	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	116.5	1.4e-36	96	183	8	95
NF-YB 8 lPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 + i ++rim+++lP naki + ake++q cvsef++ +t++a+++c++e+rk i++ddl+wa+ ++Gf+dyv plk+ylkkyr Tp57577_TGAC_v2_mRNA34420 96 ILIVHLTRIMRRALPRNAKINNGAKESIQLCVSEFMGIITTKANERCKAEHRKIITADDLIWAMEKFGFDDYVGPLKLYLKKYR 179 568899****************************************************************************** PP NF-YB 92 eleg 95 + + Tp57577_TGAC_v2_mRNA34420 180 DHKD 183 9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	3.3E-32	92	184	IPR009072	Histone-fold
SuperFamily	SSF47113	1.39E-25	101	185	IPR009072	Histone-fold
Pfam	PF00808	3.8E-15	102	159	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.6E-8	123	141	No hit	No description
PRINTS	PR00615	1.6E-8	142	160	No hit	No description
PRINTS	PR00615	1.6E-8	161	179	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
LSNQFNLSPK VLWSTEALRL TTIVQQHQAL VSALTNTKYV RSYLRYFELR CSYFSKVKKK 60 EKKKRRESLY LKRIIDTYFI IFEKHVPPKE GEEVNILIVH LTRIMRRALP RNAKINNGAK 120 ESIQLCVSEF MGIITTKANE RCKAEHRKII TADDLIWAME KFGFDDYVGP LKLYLKKYRD 180 HKDQTGDIWV *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	1e-31	98	180	15	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	61	65	KKKRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA34420

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2Z6MQP1	7e-57	A0A2Z6MQP1_TRISU; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21178	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47670.2	9e-33	nuclear factor Y, subunit B6

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA34420