PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA34494
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GATA
Protein Properties Length: 287aa    MW: 32230.3 Da    PI: 9.7258
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA34494genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.13.2e-20208242135
                       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                Cs+Cg+tkTp+WR gp g+ktLCnaCG++y++ +l
  Tp57577_TGAC_v2_mRNA34494 208 CSHCGVTKTPQWRTGPVGPKTLCNACGVRYKSGRL 242
                                *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF082631.6E-82857IPR013210Leucine-rich repeat-containing N-terminal, plant-type
SMARTSM004016.1E-17202256IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.242202238IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.71E-15203264No hitNo description
Gene3DG3DSA:3.30.50.103.4E-15206240IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.83E-14207255No hitNo description
PROSITE patternPS003440208233IPR000679Zinc finger, GATA-type
PfamPF003206.2E-18208242IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MANHTMLPMF FLLLTSLILH SKACNVVDKE ALLQFKNQIT SDPSKLLNSW TPSSDCCKGT  60
DFGDKRFKRE LEVEEAADLE WLSYFVEDSF SEFAITENLQ EKASEQKPTF STPCFKPPVP  120
AKARSKRTRT GVRVWPISLM DSSSTSSSTT LSSSSSHHEE CSKPPEKKKR VSLRXXXXXX  180
XXXXXXXXXX XXRVSLRDGE GRGVPRRCSH CGVTKTPQWR TGPVGPKTLC NACGVRYKSG  240
RLLPEYRPAC SPTFSTELHS NHHRKVLEMR RKKEDVPGSP LTVPGF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA34494
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1467202e-74AC146720.23 Medicago truncatula chromosome 8 clone mth2-17n5, complete sequence.
GenBankAC1743512e-74AC174351.5 Medicago truncatula chromosome 8 clone mth2-7h5, complete sequence.
GenBankBT1343882e-74BT134388.1 Medicago truncatula clone JCVI-FLMt-13N24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004509331.13e-98GATA transcription factor 5-like
TrEMBLA0A2K3LXX41e-118A0A2K3LXX4_TRIPR; GATA transcription factor
STRINGXP_004509331.11e-97(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110834107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.11e-42GATA transcription factor 9