PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA34744

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

Dof

Protein Properties

Length: 495aa MW: 54646.2 Da PI: 6.4411

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA34744	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.3	1.9e-39	140	200	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+++cprC s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+ss Tp57577_TGAC_v2_mRNA34744 140 PDKIIPCPRCRSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKTSS 200 7899******************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	9.6E-32	142	198	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.621	144	198	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	146	182	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-25	146	197	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 495 aa Download sequence Send to blast
MLETKDSAIK LFGKTIPVPE ILPALSSGDV VDESIESIHD ENHDSSTNSS RESHNTRDDA 60 HEQEIEKDTS GEKQTDEKNE GVSMQSTGEF TNQDAASGTG EESITVSTER EDATLKTSKT 120 EKEEQQDETS NSQDKILKKP DKIIPCPRCR SMDTKFCYYN NYNVNQPRHF CKNCQRYWTA 180 GGTMRNVPVG AGRRKNKTSS SHYRQITVSE ATLQNSRIHP SLKCNGTILT FGSNTPLCES 240 MSSVLKLADK SVQNYTRNGF RKPEVLRIHV PHASGENGDD QSNKSLITST KSMEVASTNV 300 SQEPGMQNGQ SFSPQGAYFP PGTPWSFPWS QVQWSSSIPP PTFCPPGFSM PFYPPASYWG 360 CTVPGAWNLP WQAQPSSPNG ANPNSSPNSP TLGKHSREDN VLKSSEDSRK ESREEKCLWF 420 PKTLRIDDSG EAEKSSLWTT LGIKNNKADS VSSGRLFNVF PSKCDEPNHL VQASSILQAN 480 PAALTRSLNF RETS*

Sequence ? help Back to Top

Protein Sequence Length: 495 aa Download sequence Send to blast

MLETKDSAIK LFGKTIPVPE ILPALSSGDV VDESIESIHD ENHDSSTNSS RESHNTRDDA  60
HEQEIEKDTS GEKQTDEKNE GVSMQSTGEF TNQDAASGTG EESITVSTER EDATLKTSKT  120
EKEEQQDETS NSQDKILKKP DKIIPCPRCR SMDTKFCYYN NYNVNQPRHF CKNCQRYWTA  180
GGTMRNVPVG AGRRKNKTSS SHYRQITVSE ATLQNSRIHP SLKCNGTILT FGSNTPLCES  240
MSSVLKLADK SVQNYTRNGF RKPEVLRIHV PHASGENGDD QSNKSLITST KSMEVASTNV  300
SQEPGMQNGQ SFSPQGAYFP PGTPWSFPWS QVQWSSSIPP PTFCPPGFSM PFYPPASYWG  360
CTVPGAWNLP WQAQPSSPNG ANPNSSPNSP TLGKHSREDN VLKSSEDSRK ESREEKCLWF  420
PKTLRIDDSG EAEKSSLWTT LGIKNNKADS VSSGRLFNVF PSKCDEPNHL VQASSILQAN  480
PAALTRSLNF RETS*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA34744

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003621247.2	0.0	cyclic dof factor 2
TrEMBL	A0A2K3PAB0	0.0	A0A2K3PAB0_TRIPR; Dof zinc finger protein
STRING	AES77465	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-81	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA34744