PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA34777
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family HD-ZIP
Protein Properties Length: 248aa    MW: 29052.1 Da    PI: 5.0589
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA34777genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.61.2e-194597456
                               -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                               +++f++eq++ Le  Fe+++++  +++ +LA+ lgL+ rqV +WFqNrRa++k
  Tp57577_TGAC_v2_mRNA34777 45 KRRFSDEQIRSLECIFESESKLEPRKKIQLARDLGLQPRQVAIWFQNRRARWK 97
                               568*************************************************9 PP
2HD-ZIP_I/II124.35.5e-4043135193
                HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 
                                e+krr+s+eq+++LE  Fe+e+kLep++K +lar+Lglqprqva+WFqnrRAR+k+k++E+dy++Lk+ayd+l+++ ++L++e+
  Tp57577_TGAC_v2_mRNA34777  43 ENKRRFSDEQIRSLECIFESESKLEPRKKIQLARDLGLQPRQVAIWFQNRRARWKSKRIEQDYRKLKDAYDNLASKFQSLKEEK 126
                                58********************************************************************************** PP

                HD-ZIP_I/II  85 eeLreelke 93 
                                e+L++e+++
  Tp57577_TGAC_v2_mRNA34777 127 ESLQSEVQK 135
                                *****9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.03E-182899IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.2E-192998IPR009057Homeodomain-like
PROSITE profilePS5007117.5723999IPR001356Homeobox domain
SMARTSM003892.3E-1642103IPR001356Homeobox domain
CDDcd000865.79E-1445100No hitNo description
PfamPF000464.6E-174597IPR001356Homeobox domain
PRINTSPR000311.3E-57079IPR000047Helix-turn-helix motif
PROSITE patternPS0002707497IPR017970Homeobox, conserved site
PRINTSPR000311.3E-57995IPR000047Helix-turn-helix motif
PfamPF021835.6E-1399138IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MMEEEENIHE GYKGKNVEIS SMSCLELETS SSQNSRKKNK KVENKRRFSD EQIRSLECIF  60
ESESKLEPRK KIQLARDLGL QPRQVAIWFQ NRRARWKSKR IEQDYRKLKD AYDNLASKFQ  120
SLKEEKESLQ SEVQKLSYMV ETSHDCGGRE AKEHSTEDGG SGNGYSNCRV ETMQRFSNEG  180
LEDRMVIYSD DQNERSTTRI EDRGNQVLRN DDDAEIPLTT LEKWYNVDPT SILDQSCNYS  240
QWLDFWT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA34777
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU3022481e-124CU302248.6 M.truncatula DNA sequence from clone MTH2-33P23 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003602321.21e-138homeobox-leucine zipper protein ATHB-12
TrEMBLA0A2K3N8461e-180A0A2K3N846_TRIPR; Homeobox-leucine zipper protein ATHB-7-like
STRINGAES725721e-136(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120052635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.17e-38homeobox 7