PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA34973
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family LBD
Protein Properties Length: 166aa    MW: 18309.6 Da    PI: 8.4849
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA34973genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260147.15e-46131121100
                     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 
                                +CaaCk+lrr+CakdCv+apyfpa++p+kf nvhk+FGasnv k+l++lpe++r+da+ss+vyeA+ar+rdPvyG+vg i++lq
  Tp57577_TGAC_v2_mRNA34973  13 PCAACKLLRRRCAKDCVFAPYFPADEPHKFGNVHKVFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQ 96 
                                7*********************************************************************************** PP

                     DUF260  85 qqleqlkaelallkee 100
                                qq++ l+++la++++e
  Tp57577_TGAC_v2_mRNA34973  97 QQVDVLQTQLAQAQAE 112
                                ***********99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.08712113IPR004883Lateral organ boundaries, LOB
PfamPF031954.6E-4513110IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MKDGGRKQGA MSPCAACKLL RRRCAKDCVF APYFPADEPH KFGNVHKVFG ASNVNKMLQE  60
LPEHQRSDAV SSMVYEANAR VRDPVYGCVG AISSLQQQVD VLQTQLAQAQ AEVVHMKMHQ  120
FSSPNQHQPS YTPSATNSSP PSENVYQSSR LVTSHINIDQ SLWSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-5091147112LOB family transfactor Ramosa2.1
5ly0_B2e-5091147112LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA34973
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0521611e-153BT052161.1 Medicago truncatula clone MTYF9_FA_FB_FC1G-F-14 unknown mRNA.
GenBankBT1446061e-153BT144606.1 Medicago truncatula clone JCVI-FLMt-10M6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001340933.18e-94LBD domain-containing transcription factor
RefseqXP_028246177.18e-94LOB domain-containing protein 4-like
SwissprotQ9SHE92e-66LBD4_ARATH; LOB domain-containing protein 4
TrEMBLA0A445JFU02e-92A0A445JFU0_GLYSO; LOB domain-containing protein 4
TrEMBLB7FJ941e-92B7FJ94_MEDTR; Putative transcription factor AS2-LOB family
TrEMBLI1KU112e-92I1KU11_SOYBN; Uncharacterized protein
STRINGGLYMA08G17990.13e-93(Glycine max)
STRINGAES663932e-93(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133434105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.11e-59LOB domain-containing protein 4