PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA35059
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 263aa    MW: 30228.4 Da    PI: 10.1327
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA35059genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.91.3e-143174347
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                               rWT  Ed++l ++vk +G+++W+ Ia+++  gR++k+c++rw + 
  Tp57577_TGAC_v2_mRNA35059 31 RWTRSEDDKLNKLVKYFGPRNWNHIAEHFH-GRSEKSCRLRWINQ 74
                               9*****************************.***********985 PP
2Myb_DNA-binding45.41.9e-1481125147
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                r ++++eE  +l+ a + +G++ W+tI + ++ gRt +q+k+++++ 
  Tp57577_TGAC_v2_mRNA35059  81 RSKFSKEEKAKLLAAQRFYGNN-WATICKLFP-GRTNNQVKNHFYMM 125
                                789*****************99.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.9622479IPR017930Myb domain
SMARTSM007173.1E-112877IPR001005SANT/Myb domain
SuperFamilySSF466896.25E-2631126IPR009057Homeodomain-like
CDDcd001673.24E-123173No hitNo description
Gene3DG3DSA:1.10.10.601.9E-243182IPR009057Homeodomain-like
PfamPF139211.3E-173292No hitNo description
SMARTSM007176.4E-1380128IPR001005SANT/Myb domain
PROSITE profilePS5129413.05880130IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-1783128IPR009057Homeodomain-like
CDDcd001673.82E-1083126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MSSQNFNNND LSLXXXXXXX XXXXXXXXXX RWTRSEDDKL NKLVKYFGPR NWNHIAEHFH  60
GRSEKSCRLR WINQLDPKIN RSKFSKEEKA KLLAAQRFYG NNWATICKLF PGRTNNQVKN  120
HFYMMMAKMQ REXXFRTPPT MYRITSTTDV PNSACTNVSC FTGPLLYRQA YGSQMGLHGE  180
RKVEVGNFGY ETNFSAMKGS YVSRMGKING VDKSNYSYSN SEASVSEAGS TIRTNVSIFG  240
ECENVRSKTK LQYFDFLGIG DK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-253212210100B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA35059
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013451507.13e-77transcription factor MYB54
TrEMBLA0A072UI907e-76A0A072UI90_MEDTR; Myb transcription factor
STRINGXP_004489664.15e-71(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33450.16e-45myb domain protein 69