PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA35095
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 250aa    MW: 28106.5 Da    PI: 8.3896
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA35095genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.81.4e-1488133247
                                SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                g WT+eE+e ++++ k  G+g W+ I+r+  k+Rt+ q+ s+ qk+
  Tp57577_TGAC_v2_mRNA35095  88 GVWTEEEHEMFLKGLKHIGKGKWTEISRRYVKTRTPTQVASHAQKH 133
                                78******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.6882138IPR017930Myb domain
SMARTSM007172.8E-886136IPR001005SANT/Myb domain
SuperFamilySSF466896.39E-1587138IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.4E-1188133IPR009057Homeodomain-like
PfamPF002492.3E-1188133IPR001005SANT/Myb domain
TIGRFAMsTIGR015574.2E-1389136IPR006447Myb domain, plants
CDDcd001673.39E-990133No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MSMSRTCSQC GHISQTCNDG REHSIMLFGV KITVATNNNN NNNGDNNLYQ NQQPTPQVSS  60
SSDASTVSDN IAVHASTRSR KCKQFNEGVW TEEEHEMFLK GLKHIGKGKW TEISRRYVKT  120
RTPTQVASHA QKHSLHRSNP NRRRNRKSSV FDLTTDTVII FLFQQLSFIC KEIEVESSTI  180
MEDEQIQQET VVPLPPPTXX XXXXXXAYPS TQSCGSPANS PLPIVLGQAA LPVWPLSWVN  240
FNDNVFFFR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA35095
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004489945.13e-55transcription factor MYB1R1-like
RefseqXP_012568256.13e-55transcription factor MYB1R1-like
TrEMBLA0A2K3LW191e-118A0A2K3LW19_TRIPR; Transcription factor MYB 1R1-like protein
STRINGXP_004489945.11e-54(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32133271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70000.24e-30MYB_related family protein