PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA35100
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C3H
Protein Properties Length: 476aa    MW: 50654 Da    PI: 9.0613
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA35100genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.22e-115579327
                               S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                                ++C +++rtG+C yG+rC+F+H++
  Tp57577_TGAC_v2_mRNA35100 55 VPNCAYYMRTGFCGYGGRCRFNHPR 79
                               689********************96 PP
2zf-CCCH41.81.7e-1399124227
                                -S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                ++++C+++++tGtCk+G++CkF+H++
  Tp57577_TGAC_v2_mRNA35100  99 GEPPCQYYLKTGTCKFGASCKFHHPK 124
                                579*********************96 PP
3zf-CCCH37.44.2e-12145170227
                                -S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                ++ +C+++++tG+Ck+G +CkF+H++
  Tp57577_TGAC_v2_mRNA35100 145 GENECSYYLKTGQCKFGVTCKFHHPQ 170
                                6789********************97 PP
4zf-CCCH36.21e-11301327127
                                --S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                ++++ C++++rtG Ck+G  C+++H++
  Tp57577_TGAC_v2_mRNA35100 301 PGEPVCQYYLRTGDCKFGLACRYHHPQ 327
                                5789*********************97 PP
5zf-CCCH33.95.4e-11346370226
                                -S---SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                                +  +C f++++G+Ck+G++CkF H+
  Tp57577_TGAC_v2_mRNA35100 346 GVQPCLFYLQNGHCKFGSTCKFDHP 370
                                6789********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.1645280IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-45279IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-95579IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-65581IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-55879IPR000571Zinc finger, CCCH-type
SMARTSM003565.8E-797124IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.05197125IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-1199124IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-6100125IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-5102123IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.361143171IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-5143170IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9145170IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.14E-5146171IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-4149169IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.094300328IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-6300327IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-9302327IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5303328IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-4305328IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.971344372IPR000571Zinc finger, CCCH-type
SMARTSM003567.4E-6344371IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-8346370IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6346375IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-5348370IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MDLYVRSPTR NGSNPLNQHE WRSPTADTTA LGGVVDSMWH LTIGGGESYP ERHGVPNCAY  60
YMRTGFCGYG GRCRFNHPRD RAAVAAAVRA TGDYPERLGE PPCQYYLKTG TCKFGASCKF  120
HHPKNGGGYL SQAPLNIYGY PLRPGENECS YYLKTGQCKF GVTCKFHHPQ PAGTSLPASA  180
PQFYQQVQSP TVPLPEQFGG ASPSVRVARP PVLPGSYVQG AYGPVLLSPG VVPFPGWSPY  240
SAPVSPVLSP GAQPAVGATS LYGLTQLSSS TSAFARPYTP LPSSPGPAGS SLQEKVFPER  300
PGEPVCQYYL RTGDCKFGLA CRYHHPQDQG VARPLLSPIG LPLRPGVQPC LFYLQNGHCK  360
FGSTCKFDHP VGSMRYSPSA SSLIDVPVAP YPVGSLLSSL VPSTTYSEFR PELKSGPKKE  420
SYPARMHSSG NGSGTSVGLN FSQGGSVSLS DAQLSSQSSA SLNGSRSSRQ SGEIR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA35100
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024639704.10.0zinc finger CCCH domain-containing protein 32 isoform X1
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLI1JFH10.0I1JFH1_SOYBN; Uncharacterized protein
STRINGGLYMA02G17260.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.30.0C3H family protein