PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA35140
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ARF
Protein Properties Length: 314aa    MW: 35939.4 Da    PI: 6.5048
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA35140genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B367.12.5e-2162160298
                                EEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                         B3   2 fkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                                fk++++s   + g l++pk++ae++          ++  ++l+++d++g +W++++iy+ ++++++lt GW+ Fv++++L  gD
  Tp57577_TGAC_v2_mRNA35140  62 FKKMLTSIEDAAG-LYIPKEHAERCfpsldmtV--QQPMQDLVVKDLHGIEWNFRHIYCDHKKEHMLTCGWSTFVNSKKLVPGD 142
                                4677777777766.***************9653..333458******************************************* PP

                                EEEEEE-SSSEE..EEEEE- CS
                         B3  79 fvvFkldgrsefelvvkvfr 98 
                                +++F   + +++e  ++++r
  Tp57577_TGAC_v2_mRNA35140 143 SCIFV--RGENGEIGIGIHR 160
                                *****..3377777777766 PP
2Auxin_resp77.33.9e-26181262183
                 Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmaf.etedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                                a+ha+st+++F+v Y+P+ ++ eF+++++ +++++++ +s+G+R++  + e e s++r  +Gt+vg +d+dp+rWp+S+Wr++k
  Tp57577_TGAC_v2_mRNA35140 181 ASHAVSTGTMFHVQYYPWITPFEFMIPLRTYVESIERDYSIGTRVRRLLsEVEGSPRR--YGTIVGNEDIDPIRWPGSEWRCIK 262
                                789******************************************8655155655555..6*********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.4E-2857166IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.23E-2359161IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.64660162IPR003340B3 DNA binding domain
SMARTSM010191.1E-1362162IPR003340B3 DNA binding domain
CDDcd100177.88E-1762160No hitNo description
PfamPF023621.2E-1863160IPR003340B3 DNA binding domain
PfamPF065072.7E-23181262IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
METTNLNLPN KVLCIVIGVQ LKAHVNTDEV FALVTLIPLK QQEFMVEDNH PFDDSPSEVY  60
SFKKMLTSIE DAAGLYIPKE HAERCFPSLD MTVQQPMQDL VVKDLHGIEW NFRHIYCDHK  120
KEHMLTCGWS TFVNSKKLVP GDSCIFVRGE NGEIGIGIHR AMKQHSDIWK TSSPLGLMCA  180
ASHAVSTGTM FHVQYYPWIT PFEFMIPLRT YVESIERDYS IGTRVRRLLS EVEGSPRRYG  240
TIVGNEDIDP IRWPGSEWRC IKVQWDSTPN SFTQLESVCP WWIEPLGSPK IKSFPILPLS  300
NEGKFFLHSF IKF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A6e-72528866357Auxin response factor 1
4ldw_A6e-72528866357Auxin response factor 1
4ldw_B6e-72528866357Auxin response factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA35140
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013445290.11e-153auxin response factor 2
TrEMBLA0A2Z6MVN71e-173A0A2Z6MVN7_TRISU; Auxin response factor
STRINGXP_004511136.11e-133(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2800423
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.32e-83auxin response factor 2