PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA35156

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

NF-YB

Protein Properties

Length: 171aa MW: 19504.5 Da PI: 5.1186

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA35156	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	170.8	1.6e-53	33	128	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 +eqdr+lPianv+rimk++lP nakisk+aket+qecvsef+sfvt+easdkc++ekrkt+ngdd++wa+++lGf+dy eplk Tp57577_TGAC_v2_mRNA35156 33 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFVSFVTGEASDKCHKEKRKTVNGDDVCWAMTNLGFDDYSEPLKR 116 89******************************************************************************** PP NF-YB 86 ylkkyrelegek 97 yl kyre++ e+ Tp57577_TGAC_v2_mRNA35156 117 YLYKYREFDVER 128 *****99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.2E-53	27	153	IPR009072	Histone-fold
SuperFamily	SSF47113	2.95E-40	35	149	IPR009072	Histone-fold
Pfam	PF00808	3.1E-27	38	102	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.8E-19	66	84	No hit	No description
PRINTS	PR00615	1.8E-19	85	103	No hit	No description
PRINTS	PR00615	1.8E-19	104	122	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MGDNNNKGKV IEEAFNYNNN NNFTSPQDHE VIKEQDRLLP IANVGRIMKQ ILPPNAKISK 60 EAKETMQECV SEFVSFVTGE ASDKCHKEKR KTVNGDDVCW AMTNLGFDDY SEPLKRYLYK 120 YREFDVERGN QSKGNNINNS DEIETYNYDD DKSQTQGTSN RNLGPKSRGF *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	1e-45	32	123	1	92	Transcription factor HapC (Eurofung)
4g92_B	1e-45	32	123	1	92	Transcription factor HapC (Eurofung)
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA35156

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ918279	1e-110	JQ918279.1 Medicago truncatula nuclear transcription factor Y subunit B6 (NF-YB6) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013469195.1	1e-79	nuclear transcription factor Y subunit B-4
Swissprot	O82248	2e-57	NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBL	A0A2Z6P6Y3	1e-98	A0A2Z6P6Y3_TRISU; Uncharacterized protein
STRING	GLYMA02G17310.1	2e-73	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF805	32	131

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47810.1	1e-59	nuclear factor Y, subunit B5

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA35156

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]