PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA35172

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

Dof

Protein Properties

Length: 466aa MW: 50478.2 Da PI: 7.3266

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA35172	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.4	3.8e-39	116	176	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+++cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+ s Tp57577_TGAC_v2_mRNA35172 116 PDKIIPCPRCNSMDTKFCYFNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKNLS 176 7899******************************************************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-31	103	173	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.0E-31	118	174	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.481	120	174	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	122	158	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence Send to blast
MTEVKDPAIK LFGRTIPLPL IIPNDSSSPS SSPPEFSSAI QQETEEPSRK EPATTQDDDA 60 SQQTAEDLKS LTTSSVILEN PPKTPSAETE NSLLKSSTNG EQSETSVSEE KTLKKPDKII 120 PCPRCNSMDT KFCYFNNYNV NQPRHFCKKC QRYWTAGGTM RNVPVGAGRR KNKNLSSSHY 180 RHLIIPEAAK LNSPNGLHMG NGAAVLAFDS GSPLCNTMAS VLNIAERTQN CVPNGFHHPN 240 SYVGESGHSN AVSVTTSTSS ERKGHADTNG PVDKRVEGFP PQLQYIPSPL LPYPWSSAMP 300 PPAFCPPNYP LAFYTPVTPP AYWGCVPPPW NMPCISSESA SVNHSDSAHS SVPYSPTLGK 360 HSRDGNIITS VNSQKEKPDN EHNNTESSVL IPKTLRFDDP NEAAKSSLWS KLGINNDKAS 420 SINGGGMFNG FQSKGKDMNH SVEASPLMYA NPAALSRSRT FQEGT*

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence Send to blast

MTEVKDPAIK LFGRTIPLPL IIPNDSSSPS SSPPEFSSAI QQETEEPSRK EPATTQDDDA  60
SQQTAEDLKS LTTSSVILEN PPKTPSAETE NSLLKSSTNG EQSETSVSEE KTLKKPDKII  120
PCPRCNSMDT KFCYFNNYNV NQPRHFCKKC QRYWTAGGTM RNVPVGAGRR KNKNLSSSHY  180
RHLIIPEAAK LNSPNGLHMG NGAAVLAFDS GSPLCNTMAS VLNIAERTQN CVPNGFHHPN  240
SYVGESGHSN AVSVTTSTSS ERKGHADTNG PVDKRVEGFP PQLQYIPSPL LPYPWSSAMP  300
PPAFCPPNYP LAFYTPVTPP AYWGCVPPPW NMPCISSESA SVNHSDSAHS SVPYSPTLGK  360
HSRDGNIITS VNSQKEKPDN EHNNTESSVL IPKTLRFDDP NEAAKSSLWS KLGINNDKAS  420
SINGGGMFNG FQSKGKDMNH SVEASPLMYA NPAALSRSRT FQEGT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA35172

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC140030	0.0	AC140030.6 Medicago truncatula clone mth2-7g24, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003607748.1	0.0	cyclic dof factor 1
TrEMBL	A0A2K3N2C8	0.0	A0A2K3N2C8_TRIPR; Dof zinc finger protein (Fragment)
STRING	AES89945	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	5e-81	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA35172