PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA35173

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

Protein Properties

Length: 149aa MW: 16444.9 Da PI: 5.2076

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA35173	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	34.1	4.9e-11	53	107	40	95
ETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 40 desgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 + +g+ W++ ++ ++ + + +kGW +Fvk n+Lk gD +vF+l+++s+ + v+ Tp57577_TGAC_v2_mRNA35173 53 NCRGKGWNMIYNGQNICK-QFDRKGWGNFVKGNNLKLGDACVFELMEQSKDKIVFE 107 668999999996555554.56799********************998766666654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	7.85E-11	16	112	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	7.48E-9	50	112	No hit	No description
PROSITE profile	PS50863	10.842	50	114	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	6.6E-11	52	112	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	4.6E-9	55	107	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 149 aa Download sequence Send to blast
MTNMQTDGIK PLSGKPYFDV IISKTHLGPR YAVGPSGNIC STLPFVAVPT IINCRGKGWN 60 MIYNGQNICK QFDRKGWGNF VKGNNLKLGD ACVFELMEQS KDKIVFEVQI LRGDFQFEFS 120 GIGESEEMPV VLSEFPGTGE RDAPFLID*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA35173

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004505344.1	4e-65	B3 domain-containing protein Os04g0386900-like isoform X1
TrEMBL	A0A2Z6MZ00	1e-83	A0A2Z6MZ00_TRISU; Uncharacterized protein
STRING	XP_004505344.1	1e-64	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9722	26	40

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA35173