PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA35209
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 358aa    MW: 40553.2 Da    PI: 5.0178
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA35209genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.38.1e-1881130255
                        AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                +y GVr+++ +grWvAeI+d      ++ r +lg+++t eeAa+a+++a++ l+g
  Tp57577_TGAC_v2_mRNA35209  81 RYIGVRQRP-SGRWVAEIKDtI----QNIRLWLGTYDTGEEAARAYDEAARLLRG 130
                                799******.7*********33....35***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.94E-2980137No hitNo description
SMARTSM003804.5E-3081144IPR001471AP2/ERF domain
PfamPF008478.2E-1481130IPR001471AP2/ERF domain
PROSITE profilePS5103219.63881138IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-1981138IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.5E-2681137IPR001471AP2/ERF domain
PRINTSPR003672.1E-78293IPR001471AP2/ERF domain
PRINTSPR003672.1E-7104120IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MENMVDQPIE NIRNLSHAAV HYTKSKKTQI LNSKMVNKRN VRECEGVEKT SEERNTEWKQ  60
IREEAASVAA ALLRVRRARK RYIGVRQRPS GRWVAEIKDT IQNIRLWLGT YDTGEEAARA  120
YDEAARLLRG ANTRTNFFLC KSSHYVPSLP PKIAKTLLLR LKARNIASSC IPTSTSTTTF  180
PTNLYDDQEN KEQPEPHFFH QIEENFIEIY DGASYGSSDI TTIDCGSGTS EENVNQEGSR  240
EDFRLGYHCA NSVDDGGNNQ IAECNVEFEN CDVGVIDFQF LDTVGSLSHF YSSSPFEIAE  300
EMVGPMADEK YDVDDSLLLR ETFRMKYERK FSACLYTLIG VSECLRLQVG PENGNDF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA35209
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024638733.10.0ethylene-responsive transcription factor ERF086
TrEMBLA0A2K3PKU20.0A0A2K3PKU2_TRIPR; Ap2/erf domain-containing transcription factor
STRINGXP_004516576.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33383267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.18e-16related to AP2 11