PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA35439

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

Dof

Protein Properties

Length: 299aa MW: 32992.5 Da PI: 9.6662

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA35439	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.8	5.7e-39	72	131	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+alkcprC+stntkfCyynny+lsqPr+fCk+CrryWt+GGalrnvPvGgg+r++kk++ Tp57577_TGAC_v2_mRNA35439 72 ETALKCPRCESTNTKFCYYNNYNLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRSKKTK 131 6789****************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-27	40	126	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.3E-33	74	129	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.702	75	129	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	77	113	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MVFSSIPSYL DPLNWQQQPN QHQLLPPLSS QPHGAGSIIR PGSLPDQAQV QAQEVQTGQA 60 QAPQGKLPPP SETALKCPRC ESTNTKFCYY NNYNLSQPRH FCKTCRRYWT RGGALRNVPV 120 GGGCRRSKKT KKSTSTTTTP SKSNDKEYST SAIHSTTSNP HGDQFLHPTS RNYLNMSSLQ 180 NLNRFGVGNM FQMGDYSSNT GGGEGGVVDQ WRFQQFPFMN NGFESSSNVS FPFQSEIIEP 240 QTSSRVTTQI PTSIKSEYNG GLNLLRSPLS FSQNNNHYNN SSWTDISGLA TSSTSRLM*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA35439

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013465384.1	1e-156	dof zinc finger protein DOF2.4 isoform X1
TrEMBL	A0A2K3LH36	0.0	A0A2K3LH36_TRIPR; Dof zinc finger protein
STRING	XP_004487016.1	1e-100	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF656	34	143

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.3	1e-36	OBF-binding protein 3

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA35439