PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA35514
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 159aa    MW: 18086 Da    PI: 8.4547
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA35514genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.9e-054062123
                               EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                               y+C+ C++ Fs+   L  H++ H
  Tp57577_TGAC_v2_mRNA35514 40 YSCTFCKRGFSNAQALGGHMNIH 62
                               99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.0E-43865IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.85E-63866No hitNo description
PROSITE profilePS5015711.3234067IPR007087Zinc finger, C2H2
PROSITE patternPS0002804262IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MSYSYFPISY QRKMEYNPNK SDQIRWNSDD IGGPGQVRSY SCTFCKRGFS NAQALGGHMN  60
IHRRDRAKLK QSSEENSLSL DVSNKNTNGP DHIDLEQNHE TQRGKFTKEF PRSSSYVDIK  120
GGGVMAQRIE EKKCDIDLEL RLGYDPIDSS TLSTRSFF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16270RRDRAKLKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA35514
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0061032e-61AP006103.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT11J24, TM0185, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004492174.11e-86transcriptional regulator TAC1-like
TrEMBLA0A2K3LQV71e-104A0A2K3LQV7_TRIPR; Transcriptional regulator TAC1-like protein
STRINGXP_004492174.14e-86(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33353162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.16e-22C2H2 family protein