PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA35548
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bZIP
Protein Properties Length: 549aa    MW: 60468.8 Da    PI: 8.2759
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA35548genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.42.4e-11382440563
                                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                     bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                                kr++r   NR++A rs +RK  +i eLe kv++L++e ++L  +  +l+   ++lk+ +
  Tp57577_TGAC_v2_mRNA35548 382 KRAKRILANRLSAARSKERKMRYISELEHKVQTLQTETTTLSTQFTKLQMDNSELKNAN 440
                                9***************************************************9999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.1E-14378442IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.955380443IPR004827Basic-leucine zipper domain
PfamPF001705.3E-10382440IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.6E-11382438No hitNo description
SuperFamilySSF579598.44E-11382438No hitNo description
CDDcd147031.83E-14383455No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MEGFDQSGNN QKNIHTFSSS LGASAKPPIR LNSMPINQIN QMGFPENHKS SGLGIPPSYP  60
NTNTSLSPKP SSPYPQFIGS QSQSHSRSSS QPTFFSLDSF SLPPLSPSVY PPVSSNPFSD  120
SGSKDISMEE NFGVSHAPSP SRGHAVQHGL CLPPRKGHRR SSSDSPLGIS EFVNSVPQLV  180
GDRRNLVSGG EKSGYEKPVQ LVLKGRDSVD GFRGEVFDGK KEDTMDDLFT AYMNLENMHN  240
MSFSGMEDSR TSGSKTVESS DNEAESHVNV KGIGAKGASS SGSDERREGV KRNSNGDIAP  300
GSRHRRSFSL DSSIGNFQFE DGSPKLPPLQ SQAGQHSPSN SMDGCKTPEI SMEFGNGEFS  360
SQEIKKIMEN DKLAEIAVSD PKRAKRILAN RLSAARSKER KMRYISELEH KVQTLQTETT  420
TLSTQFTKLQ MDNSELKNAN NEYKLRLQSM EQQSQLKDAL NETLDAEVRR LRRTVAELGG  480
ESLLSSLMAR QLALNQQMFQ SQHQQPTQLR NFQPQNSQSQ EETQTQSQQH IQRNHEFQSK  540
HQNGKTTA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA35548
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1242160.0AC124216.27 Medicago truncatula clone mth2-34o22, complete sequence.
GenBankAC1743150.0AC174315.4 Medicago truncatula clone mth2-165c4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003589390.10.0uncharacterized protein LOC11428070
RefseqXP_024631191.10.0uncharacterized protein LOC11428070
TrEMBLA0A2K3PIG30.0A0A2K3PIG3_TRIPR; BZIP transcription factor
STRINGAES596410.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22723484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.32e-74bZIP family protein