PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA3556

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

MYB

Protein Properties

Length: 241aa MW: 27380.4 Da PI: 9.4485

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA3556	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.8	1.1e-17	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed++l+d+++ +G g+W +I++ g++R++k+c++rw++yl Tp57577_TGAC_v2_mRNA3556 13 KGAWSKQEDQKLIDYIQVHGEGCWGSIPKAAGLHRCGKSCRLRWLNYL 60 79********************************************97 PP
2	Myb_DNA-binding	44.1	4.9e-14	67	127	2	47
SSS-HHHHHHHHHHHHHTTTT................-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg................tWktIartmgkgRtlkqcksrwqky 47 g + ++E++l+++++++lG++ +W++Ia +++ gRt++++k++w+++ Tp57577_TGAC_v2_mRNA3556 67 GIFAQDEEDLIIKLHALLGNRyptlhyklvhvtniliRWALIAGRLP-GRTDNEVKNYWNSH 127 66779****************************************.*********987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.4E-24	4	62	IPR009057	Homeodomain-like
PROSITE profile	PS51294	24.775	8	64	IPR017930	Myb domain
SMART	SM00717	5.7E-15	12	62	IPR001005	SANT/Myb domain
Pfam	PF00249	2.9E-16	13	60	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	8.59E-24	13	64	IPR009057	Homeodomain-like
CDD	cd00167	3.19E-11	15	60	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.8E-21	63	133	IPR009057	Homeodomain-like
SMART	SM00717	6.2E-10	65	130	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	12.514	65	132	IPR017930	Myb domain
Pfam	PF00249	7.1E-12	69	127	IPR001005	SANT/Myb domain
CDD	cd00167	1.09E-7	71	128	No hit	No description
SuperFamily	SSF46689	8.59E-24	100	129	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MRTPCCDKEN INKGAWSKQE DQKLIDYIQV HGEGCWGSIP KAAGLHRCGK SCRLRWLNYL 60 RPDIKRGIFA QDEEDLIIKL HALLGNRYPT LHYKLVHVTN ILIRWALIAG RLPGRTDNEV 120 KNYWNSHIRR KLIKMGIDPN NHKLHKGFPS PHVFAAGTSS SSCDKSINKL EINNNNNQIS 180 FIKSKSCDDE YINNSVSLTK KETSSLNLDL TIALPSPNKF VIPNNCESRK TRDMDIDLNC 240 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	7e-26	11	132	25	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA3556

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT699109	1e-108	KT699109.1 Trifolium repens MYB134 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004490862.1	1e-116	transcription factor MYB3-like
Swissprot	P81393	2e-67	MYB08_ANTMA; Myb-related protein 308
TrEMBL	A0A110AH76	1e-123	A0A110AH76_TRIRP; MYB134
STRING	XP_004490862.1	1e-115	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF264	34	221

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	6e-68	myb domain protein 3

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA3556

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]