PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA35571
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 158aa    MW: 18345.6 Da    PI: 7.7231
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA35571genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.41.4e-122062346
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                                WT+eEd +l  av+ +G  +W  +a+ +  +Rt+ qc +rw k
  Tp57577_TGAC_v2_mRNA35571 20 EWTEEEDAQLCSAVAYFGDSNWQNVASVLE-RRTGTQCSNRWKK 62
                               7*****************************.***********97 PP
2Myb_DNA-binding46.48.8e-1569112146
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                +g++T eEde+l  av ++G + W+ Ia++++ gR   qc++r+++
  Tp57577_TGAC_v2_mRNA35571  69 KGSFTLEEDERLTVAVMLFGRK-WNQIAKYVP-GRIQSQCRDRYLN 112
                                799*****************99.*********.***********98 PP
3Myb_DNA-binding414.6e-13122158341
                                SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS
            Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 
                                 WT+eEd++l  a++++G   W+++a+ ++  Rt+ qc+
  Tp57577_TGAC_v2_mRNA35571 122 GWTEEEDLRLEAAITKYGYC-WSKVAEDVP-PRTDSQCR 158
                                5*****************99.*********.9******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.03E-17263IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.8E-151163IPR009057Homeodomain-like
PROSITE profilePS5129414.7851368IPR017930Myb domain
SMARTSM007171.5E-91766IPR001005SANT/Myb domain
PfamPF002491.1E-112062IPR001005SANT/Myb domain
CDDcd001672.60E-102062No hitNo description
SuperFamilySSF466893.95E-2266158IPR009057Homeodomain-like
SMARTSM007171.1E-1268116IPR001005SANT/Myb domain
PROSITE profilePS5129410.36269114IPR017930Myb domain
CDDcd001671.39E-871114No hitNo description
Gene3DG3DSA:1.10.10.604.7E-2071121IPR009057Homeodomain-like
PfamPF139218.2E-1472131No hitNo description
PROSITE profilePS5129420.646115158IPR017930Myb domain
SMARTSM007170.0067119158IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-13122158IPR009057Homeodomain-like
CDDcd001671.23E-9123158No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
PFQCLARFQR SLNSSMINSE WTEEEDAQLC SAVAYFGDSN WQNVASVLER RTGTQCSNRW  60
KKSIFPVRKG SFTLEEDERL TVAVMLFGRK WNQIAKYVPG RIQSQCRDRY LNSLDPSLKW  120
GGWTEEEDLR LEAAITKYGY CWSKVAEDVP PRTDSQCR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-3021587155MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-3021587155MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA35571
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150442e-52AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004512739.11e-100uncharacterized protein LOC101490682 isoform X1
RefseqXP_004512740.11e-100uncharacterized protein LOC101490682 isoform X2
RefseqXP_012574715.11e-100uncharacterized protein LOC101490682 isoform X3
RefseqXP_027193356.11e-101uncharacterized protein LOC101490682 isoform X4
TrEMBLA0A2Z6NHC41e-105A0A2Z6NHC4_TRISU; Uncharacterized protein
STRINGXP_004512739.12e-99(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74413344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.24e-66myb domain protein 4r1