PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA3558
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 168aa    MW: 19891.4 Da    PI: 10.6769
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA3558genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.51.3e-071544130
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIart 30
                              +g+W  eEd+ll+d+++++G g W++++++
  Tp57577_TGAC_v2_mRNA3558 15 KGAWMYEEDKLLKDCINKYGEGKWHLVPQR 44
                              799************************987 PP
2Myb_DNA-binding43.86.1e-1491135248
                               SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                ++ ++E + +++++k+lG++ W++Ia +++ gRt +++k++w+++l
  Tp57577_TGAC_v2_mRNA3558  91 ESFAEDEVDMIIRLHKLLGNR-WSLIAGRLP-GRTSNDVKNYWHTHL 135
                               6778999**************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500909.2221084IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.1E-191086IPR009057Homeodomain-like
SuperFamilySSF466891.52E-2313131IPR009057Homeodomain-like
SMARTSM007173.6E-71486IPR001005SANT/Myb domain
PfamPF002493.5E-101584IPR001005SANT/Myb domain
CDDcd001671.86E-42184No hitNo description
PROSITE profilePS5129423.29685139IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-2387140IPR009057Homeodomain-like
SMARTSM007174.2E-1389137IPR001005SANT/Myb domain
PfamPF002491.9E-1290135IPR001005SANT/Myb domain
CDDcd001671.00E-895135No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MIGKLHMEKT RSVRKGAWMY EEDKLLKDCI NKYGEGKWHL VPQRAVKVIN YVVFRSKCKL  60
NHALHLTGLN RCRKSCRLRW LNYLSPNIKR ESFAEDEVDM IIRLHKLLGN RWSLIAGRLP  120
GRTSNDVKNY WHTHLQKKMV CRKLEEKKEK DNHKETIKPH VVIKPQP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-23151397108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA3558
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1999963e-85FJ199996.1 Medicago truncatula MYB transcription factor LAP2 mRNA, complete cds.
GenBankJQ6902853e-85JQ690285.1 Medicago truncatula cultivar Jemalong MYB transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003616362.32e-71transcription factor MYB113
SwissprotQ9FNV91e-51MY113_ARATH; Transcription factor MYB113
TrEMBLA0A097J9V14e-71A0A097J9V1_TRIRP; R2R3 MYB protein
STRINGAES993204e-71(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.14e-54myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]