PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA3563
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 243aa    MW: 28151.4 Da    PI: 5.7048
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA3563genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.12.4e-19956148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              rg WT+eEd+ll+ +++++G g+W++++++ g++R++k+c++rw++yl
  Tp57577_TGAC_v2_mRNA3563  9 RGTWTPEEDKLLKACIEKYGEGNWHLVSERAGLNRCRKSCRLRWLNYL 56
                              89********************************************97 PP
2Myb_DNA-binding46.67.7e-1562107148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               r +++++E +l+++++++lG++ W++Ia +++ gRt +++k++w+++l
  Tp57577_TGAC_v2_mRNA3563  62 RESFSKDEVDLIKRLHELLGNK-WSLIAGRLP-GRTSNDVKNYWYTHL 107
                               6789******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.922160IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-22659IPR009057Homeodomain-like
SuperFamilySSF466898.79E-307103IPR009057Homeodomain-like
SMARTSM007171.6E-17858IPR001005SANT/Myb domain
PfamPF002491.7E-18956IPR001005SANT/Myb domain
CDDcd001673.36E-131156No hitNo description
Gene3DG3DSA:1.10.10.601.9E-2360111IPR009057Homeodomain-like
SMARTSM007174.9E-1561109IPR001005SANT/Myb domain
PROSITE profilePS5129419.08461111IPR017930Myb domain
PfamPF002491.8E-1362107IPR001005SANT/Myb domain
CDDcd001671.41E-1064107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MENTGGLRRG TWTPEEDKLL KACIEKYGEG NWHLVSERAG LNRCRKSCRL RWLNYLNPNI  60
NRESFSKDEV DLIKRLHELL GNKWSLIAGR LPGRTSNDVK NYWYTHLKKK VVSEEDDEEE  120
DEEKEKKEKK KLKETMTFHE VIKPRPLYLS SNFGKQPVMA SNPDTETVRV PNQIANCSSA  180
SQPNLGNVPI PSEMWSESLW HMGEDVNATC SSLQENNYQE FPNVDNSFWD SNHGDFYNLW  240
DP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-2371115108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA3563
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024639040.12e-97transcription factor WER
SwissprotQ9FNV97e-53MY113_ARATH; Transcription factor MYB113
TrEMBLA0A2K3L1531e-123A0A2K3L153_TRIPR; MYB transcription factor an2
STRINGAES993098e-97(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.12e-52myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]