PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA35661
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 141aa    MW: 15814.1 Da    PI: 9.7354
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA35661genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.35e-1744136195
                                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTE...EEE-TTHHHHHHHHT--TT-E CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgr...yvltkGWkeFvkangLkegDf 79 
                                f+k+  + +v+ s++l +p +f ++h  +  + ++++l +++g++W+v+     ++       + +++GW +Fv+ ng+k+g +
  Tp57577_TGAC_v2_mRNA35661  44 FVKIIQKFNVGGSCLLNIPSQFSKAHFPN--RIIKIILHNLKGEQWTVNAVNidSN---VyryHSIRGGWIDFVRGNGIKVGNV 122
                                7788888899****************744..6689**************9444333...333699******************* PP

                                EEEEE-SSSEE..EEE CS
                         B3  80 vvFkldgrsefelvvk 95 
                                ++F+l++++e    v+
  Tp57577_TGAC_v2_mRNA35661 123 CIFELMRENEL--SVR 136
                                ****9985444..555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.7E-2335138IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.61E-2239137IPR015300DNA-binding pseudobarrel domain
CDDcd100179.32E-2342137No hitNo description
PROSITE profilePS5086313.36644140IPR003340B3 DNA binding domain
SMARTSM010192.4E-1444136IPR003340B3 DNA binding domain
PfamPF023621.6E-1444136IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
VSILNRSGKD DDHYIPSSGA SLSRSSICHE KKIAQSYTST FPYFVKIIQK FNVGGSCLLN  60
IPSQFSKAHF PNRIIKIILH NLKGEQWTVN AVNIDSNVYR YHSIRGGWID FVRGNGIKVG  120
NVCIFELMRE NELSVRIAEV *
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA35661
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004499102.13e-54B3 domain-containing protein Os01g0723500-like isoform X1
RefseqXP_027189765.12e-54B3 domain-containing protein Os01g0723500-like isoform X2
TrEMBLA0A1S2Y4B76e-53A0A1S2Y4B7_CICAR; B3 domain-containing protein Os01g0723500-like isoform X1
TrEMBLA0A3Q7YF215e-53A0A3Q7YF21_CICAR; B3 domain-containing protein Os01g0723500-like isoform X2
STRINGXP_004499102.11e-53(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2790923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.15e-10B3 family protein