PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA35677
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family HD-ZIP
Protein Properties Length: 247aa    MW: 28680.2 Da    PI: 5.5421
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA35677genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.11.5e-1858110456
                                -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                ++++ ++q+++Le+ Fe ++++  e++ +LA++lgL+ rqV++WFqNrRa+ k
  Tp57577_TGAC_v2_mRNA35677  58 KRRLGHDQVKALEKSFELDNKLEPERKVKLAEELGLQPRQVSIWFQNRRARSK 110
                                457889*********************************************99 PP
2HD-ZIP_I/II124.45.4e-4056148193
                HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 
                                ekkrrl ++qvk+LE+sFe ++kLeperKv+la+eLglqprqv +WFqnrRAR ktkqlE+dy +Lk+++dalk e ++L++++
  Tp57577_TGAC_v2_mRNA35677  56 EKKRRLGHDQVKALEKSFELDNKLEPERKVKLAEELGLQPRQVSIWFQNRRARSKTKQLERDYGVLKSNFDALKVEYSNLQQQN 139
                                69********************************************************************************** PP

                HD-ZIP_I/II  85 eeLreelke 93 
                                e+L+ +++e
  Tp57577_TGAC_v2_mRNA35677 140 EALTIKIRE 148
                                ***988875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.8652112IPR001356Homeobox domain
SMARTSM003891.3E-1755116IPR001356Homeobox domain
CDDcd000861.77E-1557113No hitNo description
SuperFamilySSF466893.59E-1857123IPR009057Homeodomain-like
PfamPF000468.7E-1658110IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.1E-1960119IPR009057Homeodomain-like
PRINTSPR000314.6E-68392IPR000047Helix-turn-helix motif
PROSITE patternPS00027087110IPR017970Homeobox, conserved site
PRINTSPR000314.6E-692108IPR000047Helix-turn-helix motif
PfamPF021831.4E-15112153IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MKRFNNSESM SSLFSMYQSK GVDQRNETKG YSEEFQAMLD RLEQEDSYED GNLMLEKKRR  60
LGHDQVKALE KSFELDNKLE PERKVKLAEE LGLQPRQVSI WFQNRRARSK TKQLERDYGV  120
LKSNFDALKV EYSNLQQQNE ALTIKIRELK EKLLEKEECP ISRGRERGGS ESNSSGVIKE  180
EISNVDSPLC FNGSLPSSMI NLVHYYDSKG SPERAFQNHF MRMEEQNFFS NIELCNFFSV  240
DQSPTL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104112RRARSKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of ABA-responsiveness, mediating the inhibitory effect of ABA on growth during seedling establishment. Binds to the DNA sequence 5'-CAATNATTG-3'. {ECO:0000269|PubMed:12678559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA35677
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:12678559, ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU0248641e-143CU024864.5 M.truncatula DNA sequence from clone MTH2-9F11 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003601381.11e-148homeobox-leucine zipper protein ATHB-5
SwissprotP466672e-48ATHB5_ARATH; Homeobox-leucine zipper protein ATHB-5
TrEMBLA0A2K3PHD71e-178A0A2K3PHD7_TRIPR; Homeobox-leucine zipper protein ATHB-6-like
STRINGAES716321e-148(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65310.11e-47homeobox protein 5
Publications ? help Back to Top
  1. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  4. Stamm P, et al.
    The Transcription Factor ATHB5 Affects GA-Mediated Plasticity in Hypocotyl Cell Growth during Seed Germination.
    Plant Physiol., 2017. 173(1): p. 907-917
    [PMID:27872245]