PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA3571

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

MYB_related

Protein Properties

Length: 90aa MW: 10630.4 Da PI: 10.0127

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA3571	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.1	4.8e-19	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd+ll+d+++++G g W++++++ g++R++k+c++rw++yl Tp57577_TGAC_v2_mRNA3571 15 KGAWTYEEDKLLKDCINKYGEGKWHLVPQRAGLNRCRKSCRLRWLNYL 62 79*********************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	23.339	10	66	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.3E-21	12	64	IPR009057	Homeodomain-like
SMART	SM00717	6.4E-14	14	64	IPR001005	SANT/Myb domain
Pfam	PF00249	9.3E-18	15	62	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	5.58E-21	16	89	IPR009057	Homeodomain-like
CDD	cd00167	1.14E-10	17	62	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.8E-5	65	89	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 90 aa Download sequence Send to blast
MRVRVYMENT IGVRKGAWTY EEDKLLKDCI NKYGEGKWHL VPQRAGLNRC RKSCRLRWLN 60 YLSPTIYRGS FAEDEIDMII RLHNLLGNR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-13	15	89	7	80	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269\|PubMed:15361138}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA3571

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ690285	6e-66	JQ690285.1 Medicago truncatula cultivar Jemalong MYB transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003616359.1	1e-45	transcription factor MYB113
Refseq	XP_003616362.3	1e-45	transcription factor MYB113
Swissprot	Q9FNV9	5e-37	MY113_ARATH; Transcription factor MYB113
TrEMBL	A0A2Z6PIX0	7e-48	A0A2Z6PIX0_TRISU; Uncharacterized protein
STRING	AES99320	3e-45	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF31	34	817

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66370.1	2e-39	myb domain protein 113

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA3571

Publications ? help Back to Top
Li T, et al. Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis. Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83 [PMID:25450360] Mondal SK,Roy S Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis. J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601 [PMID:28490275]