PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA35834
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NAC
Protein Properties Length: 345aa    MW: 39014.4 Da    PI: 7.4963
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA35834genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM153.59.3e-48161431128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgy 82 
                                l pGfrFhPtd elv+++Lk+k+ g+k+++ +vi+e+diyk+ PwdLp k  +k+++ +wyfFs++ kky+ g r nrat+ gy
  Tp57577_TGAC_v2_mRNA35834  16 LIPGFRFHPTDVELVMYFLKRKIMGRKFPV-DVITELDIYKYAPWDLPdKsLLKSGDLKWYFFSPTGKKYSIGGRMNRATEIGY 98 
                                579***************************.9***************96446677888************************** PP

                        NAM  83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                Wk+tgkd+++ + +++lvg+ +tLvf+ g+apkg +tdWvmhe+rl
  Tp57577_TGAC_v2_mRNA35834  99 WKTTGKDRSIQH-NNQLVGMIRTLVFHIGKAPKGDRTDWVMHEFRL 143
                                ***********9.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-586166IPR003441NAC domain
PROSITE profilePS5100553.57116166IPR003441NAC domain
PfamPF023655.0E-2418143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
LGLVFLFDFS MAEPKLIPGF RFHPTDVELV MYFLKRKIMG RKFPVDVITE LDIYKYAPWD  60
LPDKSLLKSG DLKWYFFSPT GKKYSIGGRM NRATEIGYWK TTGKDRSIQH NNQLVGMIRT  120
LVFHIGKAPK GDRTDWVMHE FRLDDKYLAD QGIPQSSYVI CRVFQKEGPG PRNAAQYGKP  180
FNEKDWDSEE EFDCVQAVPV AVVSAPVPIL PSSSYISAAN DMHPSASGCI GPTPVSCLSR  240
LMPSGLAQPS APSNQVDNGI LSLLSIFQED NTLARNENNX XXXXXXXXXX XXXXXXXXXX  300
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXX*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-451116712166NO APICAL MERISTEM PROTEIN
1ut4_B1e-451116712166NO APICAL MERISTEM PROTEIN
1ut7_A1e-451116712166NO APICAL MERISTEM PROTEIN
1ut7_B1e-451116712166NO APICAL MERISTEM PROTEIN
4dul_A1e-451116712166NAC domain-containing protein 19
4dul_B1e-451116712166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00583DAPTransfer from AT5G64060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA35834
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004502931.11e-168NAC domain-containing protein 82 isoform X1
SwissprotQ9FY825e-85NAC82_ARATH; NAC domain-containing protein 82
TrEMBLA0A2K3L0L80.0A0A2K3L0L8_TRIPR; Cytochrome c oxidase subunit 2
TrEMBLA0A2K3L2610.0A0A2K3L261_TRIPR; NAC domain-containing protein
TrEMBLA0A2K3MQ600.0A0A2K3MQ60_TRIPR; NAC domain-containing protein
TrEMBLA0A2K3PLZ50.0A0A2K3PLZ5_TRIPR; Cytochrome c oxidase subunit 2
STRINGXP_004502931.11e-167(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33023465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.19e-87NAC domain containing protein 103
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Deeken R, et al.
    Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments.
    Plant J., 2008. 55(5): p. 746-59
    [PMID:18485061]
  3. Ohbayashi I, et al.
    Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis.
    Plant Cell, 2017. 29(10): p. 2644-2660
    [PMID:28899981]