PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA35856
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 323aa    MW: 37407.5 Da    PI: 10.0607
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA35856genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.62.2e-13217304593
                                -..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                         B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                                 +++ + +  ++++p +f +++ ++ e+  t++++   + r W++ ++y+  ++  v  +GWk F+++ +L+++D++ F+++++
  Tp57577_TGAC_v2_mRNA35856 217 KLTKTYATGYLFRIPCDFSRTYLKDFEG--TVIMRKmGEDRIWRMDVRYDPEGDFSVVNSGWKPFCEQYNLQTRDVCKFEMTRS 298
                                3455555566799********9655333..6777775788****************************************8776 PP

                                SEE..E CS
                         B3  88 sefelv 93 
                                +  ++ 
  Tp57577_TGAC_v2_mRNA35856 299 KPLSFA 304
                                665555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.6E-926120IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.1E-1127120IPR015300DNA-binding pseudobarrel domain
CDDcd100172.53E-728117No hitNo description
SMARTSM010190.03930120IPR003340B3 DNA binding domain
SuperFamilySSF1019366.67E-16211305IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.2E-15211305IPR015300DNA-binding pseudobarrel domain
CDDcd100173.24E-11212307No hitNo description
PROSITE profilePS5086311.448213311IPR003340B3 DNA binding domain
SMARTSM010195.2E-6214311IPR003340B3 DNA binding domain
PfamPF023621.5E-10216303IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MELKLILQGH VVSSHVFNIS IMSLYNTPKF FKIIQNHELQ NGEIRIPKKF VGKYWKGMPN  60
PVVITLPNGV EQELFWVKHD GDIWLQKNWE KIAKFLKFGY LVIFKYIGGV SFKLKIFGID  120
CLEIDYSKIK FRDEQVVSDD DSVEVTKSQK KRKMKVEFDI DTSSDELFVD QTNIAGTSQT  180
RKRASNRRIM KKKATKCSTN GIGIGTSRGV TPSFKLKLTK TYATGYLFRI PCDFSRTYLK  240
DFEGTVIMRK MGEDRIWRMD VRYDPEGDFS VVNSGWKPFC EQYNLQTRDV CKFEMTRSKP  300
LSFAVAINPE PEGNLKKKML QY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA35856
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3L9K80.0A0A2K3L9K8_TRIPR; B3 domain-containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11472624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-13B3 family protein