PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA35877
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NAC
Protein Properties Length: 301aa    MW: 34826.4 Da    PI: 6.6727
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA35877genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.23.8e-54301551128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                                lppGfrFhPtdeel+v+yL+++++++++++ ++i+evdiyk++Pw+Lp k + +e+ewyfFs+r++ky++g r+nrat sgyWk
  Tp57577_TGAC_v2_mRNA35877  30 LPPGFRFHPTDEELIVYYLCNQATSQPCPA-SIIPEVDIYKFDPWELPDKSDFGENEWYFFSPRERKYPNGVRPNRATVSGYWK 112
                                79****************************.89***************888899****************************** PP

                        NAM  85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                atg+dk+++s +++++g+kk Lvfykgr pkg ktdW+mheyrl
  Tp57577_TGAC_v2_mRNA35877 113 ATGTDKSIFS-GSNHIGVKKALVFYKGRPPKGIKTDWIMHEYRL 155
                                **********.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-6621182IPR003441NAC domain
PROSITE profilePS5100560.68330182IPR003441NAC domain
PfamPF023651.5E-2631155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009825Biological Processmultidimensional cell growth
GO:0009835Biological Processfruit ripening
GO:0009908Biological Processflower development
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MARALFIVSY FFFSFLFSLS LMESRTCSEL PPGFRFHPTD EELIVYYLCN QATSQPCPAS  60
IIPEVDIYKF DPWELPDKSD FGENEWYFFS PRERKYPNGV RPNRATVSGY WKATGTDKSI  120
FSGSNHIGVK KALVFYKGRP PKGIKTDWIM HEYRLIGSRK QPNRQIGSMR LDDWVLCRIY  180
KKKNITKSLE TNEDYTTNQM NMTQTNDDSE QELVKFPRTC SLTNLLEMDY LGPISQILSD  240
GSYNSTFEFQ INTAHGGLMD PFVKSQMVEM PKNNPYEGDL EKYHVKQNSS LGNQVFDQRE  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-723018417167NO APICAL MERISTEM PROTEIN
1ut4_B1e-723018417167NO APICAL MERISTEM PROTEIN
1ut7_A1e-723018417167NO APICAL MERISTEM PROTEIN
1ut7_B1e-723018417167NO APICAL MERISTEM PROTEIN
3swm_A2e-723018420170NAC domain-containing protein 19
3swm_B2e-723018420170NAC domain-containing protein 19
3swm_C2e-723018420170NAC domain-containing protein 19
3swm_D2e-723018420170NAC domain-containing protein 19
3swp_A2e-723018420170NAC domain-containing protein 19
3swp_B2e-723018420170NAC domain-containing protein 19
3swp_C2e-723018420170NAC domain-containing protein 19
3swp_D2e-723018420170NAC domain-containing protein 19
4dul_A1e-723018417167NAC domain-containing protein 19
4dul_B1e-723018417167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269|PubMed:29760199}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00221DAPTransfer from AT1G69490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA35877
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269|PubMed:29760199}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM2114980.0KM211498.1 Medicago sativa NAC transcription factor (NAP) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003613866.11e-180NAC transcription factor 29
SwissprotK4BNG71e-114NAP2_SOLLC; NAC domain-containing protein 2
TrEMBLA0A097PHQ60.0A0A097PHQ6_MEDSA; NAC transcription factor
STRINGAES968241e-180(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41033262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-112NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Ma X, et al.
    The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato.
    Plant Physiol., 2018. 177(3): p. 1286-1302
    [PMID:29760199]