PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA35878
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 212aa    MW: 23678.8 Da    PI: 6.8718
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA35878genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.63.3e-0924462245
                               T-HHHHHHHHTTTS-HHHHHHHHH CS
            Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwq 45
                               +tW+tIa+ ++ +Rt++++k++w+
  Tp57577_TGAC_v2_mRNA35878 24 PTWSTIAALLP-RRTDNDIKNHWN 46
                               59*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.79E-72458IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.1E-102561IPR009057Homeodomain-like
PfamPF002495.4E-62546IPR001005SANT/Myb domain
CDDcd001674.98E-52646No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MSLPSSIIHS VQRTSLNSTL ISLPTWSTIA ALLPRRTDND IKNHWNANIK KRLIKMGIDP  60
TTHKPKSNIK DNINIALKHK AQWESVRLET EARSSMLGKI QTQPLICSSS SPNFSITNHN  120
NAMDNMCAIM FANDDVDPLF PMHCNVTYNN TNNIMETSGQ EIMHSYASNL QGDDDIMVAL  180
EAFRDSFNVD TFMDFNGNGM CKFDAGYAFS K*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA35878
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003613875.35e-62transcription factor MYB16
TrEMBLA0A2K3MR361e-134A0A2K3MR36_TRIPR; MYB transcription factor
STRINGAES968332e-60(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13536826
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.16e-24myb domain protein 16